GgaEX6031700 @ galGal4
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
collagen alpha-1(XII) chain precursor [Source:RefSeq peptide;Acc:NP_990352]
Coordinates
chr3:80275074-80277164:+
Coord C1 exon
chr3:80275074-80275148
Coord A exon
chr3:80275680-80275819
Coord C2 exon
chr3:80277041-80277164
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTCTTGGTCTTTCAGTAT
3' ss Score
9.78
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TCCTCAAACCTACAGAGGCACCAACTCCACCGCCTACGCCTCCTCCACCTCCCACAATCCCTCCAGCTCGGGATG
Seq A exon
TATGCAGAGGTGCTAAAGCAGACATAGTGTTCTTGACTGATGCTTCCTGGAGTATTGGTGATGATAACTTCAACAAAGTAGTAAAGTTTGTTTTTAATACAGTAGGAGCCTTTGACTTGATTAATCCTGCTGGAATCCAG
Seq C2 exon
GTTTCATTTGTGCAGTACAGCGATGAAGCAAAATCTGAGTTTAAACTGAATACATTTGATGACAAGGCTCAAGCCCTGGGAGCTCTTCAAAATGTTCAATACAGAGGAGGAAACACACGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'65-59,'65-58,66-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=PU(22.4=83.0)
C2:
PF0009223=VWA=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACAGAGGCACCAACTCCA
R:
TCCGTGTGTTTCCTCCTCTGT
Band lengths:
188-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]