BtaEX6048037 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020056 | COL12A1
Description
collagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2188]
Coordinates
chr9:14905501-14909322:-
Coord C1 exon
chr9:14909248-14909322
Coord A exon
chr9:14907271-14907410
Coord C2 exon
chr9:14905501-14905624
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTTTTCTCCCCCAGTGT
3' ss Score
11.56
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CCTTAAAACCAACGGAAGCCCCGACAGAGCCACCCACACCCCCTCCTCCTCCTACAATTCCACCAGCCCGGGAAG
Seq A exon
TGTGCAAAGGGGCCAAAGCAGATATTGTATTCCTGACCGATGCTTCCTGGAGTATTGGGGATGATAATTTTAACAAAGTTGTAAAATTCATCTTCCATACCGTGGGAGGCTTTGATGAAATCAGTCCTGCTGGAATTCAG
Seq C2 exon
GTCTCATTTGTGCAGTACAGTGACGAGGTCAAGTCTGAGTTTAAGCTGAACACATACAACGACAAGGCCCTGGCCCTGGGGGCCCTCCAGAACATTCGGTACAGAGGAGGAAACACAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020056-'43-49,'43-48,44-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=PU(22.4=83.0)
C2:
PF0009223=VWA=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTAAAACCAACGGAAGCCC
R:
CTTGTGTTTCCTCCTCTGTACCG
Band lengths:
194-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]