DreEX6056258 @ danRer10
Exon Skipping
Gene
ENSDARG00000078322 | col12a1a
Description
collagen, type XII, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090728-1]
Coordinates
chr17:49742550-49746289:-
Coord C1 exon
chr17:49746215-49746289
Coord A exon
chr17:49742761-49742900
Coord C2 exon
chr17:49742550-49742673
Length
140 bp
Sequences
Splice sites
3' ss Seq
CATTTGTTTTGTGATGGCAGTGT
3' ss Score
3.06
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
TGGTGAAGCCCACCGTCGCCCCAACACTACCTCCAACTCCTCCACCTCCAGCCACCATTCCTTCTGCACTCGAGG
Seq A exon
TGTGCAAAGGTGCCAAGGCTGACCTGGTGTTCCTGATCGATGGCTCGTGGAGTATCGGAGATGACAGCTTCGCTAAAGTCCGGCAGTTTGTGTTCAGCATGATTGGGGCGTTTGATGTGGTCAGCCATGAGGGCATGCAG
Seq C2 exon
GTGTCTTTCGTGCAGTACAGCGACGACGCCAAAACTGAGTTCAAGCTCAACACCTACCACGACAAGGGAATGGTGCTGTCTGCTCTTCAGATGGTCAATTATAGAGGAGGAAACACCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078322-'47-48,'47-47,48-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.731 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009223=VWA=PU(22.4=83.0)
C2:
PF0009223=VWA=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCGCCCCAACACTACCTC
R:
CTGTTTTGGTGTTTCCTCCTCT
Band lengths:
186-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]