MmuEX6067496 @ mm9
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79467748-79476316:-
Coord C1 exon
chr9:79476174-79476316
Coord A exon
chr9:79474796-79474905
Coord C2 exon
chr9:79467748-79467897
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGATCTTATCTTGATTGCAGCTT
3' ss Score
7.23
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AGAACTGCATCCAAATGGACTCCCTCCTTCGTACACGATTATATTATTATTTAGACTTCTCCCAGAAACTCCTAGTGACCCCTTTGCAATTTGGCAAATTACAGACAGAGACTACAGACCACAAGTTGGAGTGATTGCAGATC
Seq A exon
CTTCCAGCAAGACACTATCTTTCTTTAATAAGGATACAAGAGGGGAGGTACAAACTGTTACATTTGACACAGATGAAGTGAAGACATTATTTTATGGAAGCTTTCATAAG
Seq C2 exon
GTCCATATTGTAGTGACCTCAAAGAGTGTTAAGATTTATATTGACTGCTATGAAATTATAGAAAAAGACATCAAAGAAGCTGGAAATATAACAACTGATGGCTACGAAATTCTTGGAAAACTTCTTAAAGGAGAGAGGAAGTCAGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'53-51,'53-50,54-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079537=Toxin_R_bind_N=PU(35.4=94.6)
C2:
PF079537=Toxin_R_bind_N=FE(49.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTCCCTCCTTCGTACAC
R:
TCCAAGAATTTCGTAGCCATCAGT
Band lengths:
245-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: