BtaEX6048044 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020056 | COL12A1
Description
collagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2188]
Coordinates
chr9:14893046-14899356:-
Coord C1 exon
chr9:14899214-14899356
Coord A exon
chr9:14898812-14898921
Coord C2 exon
chr9:14893046-14893195
Length
110 bp
Sequences
Splice sites
3' ss Seq
CAATTATGTGTTGGTTACAGCTT
3' ss Score
6.45
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AGAACTACATCCCAATGGACTCCCTCCTTCATATACAATTATATTACTATTCAGACTCCTCCCAGAAACTCCCAGCGACCCTTTTGCAATTTGGCAGATCACAGACAGAGACTATAAACCACAAGTTGGTGTGATTGCAGATC
Seq A exon
CTTCTAGCAAGACATTATCATTCTTTAACAAGGATACAAGAGGTGAGGTGCAGACTGTTACATTTGACACAGATGAAGTGAAGGCATTATTTTATGGAAGTTTTCATAAG
Seq C2 exon
GTTCATATCGTAGTGACCTCGAAAAGTGTTAAGATTTACATCGACTGCTATGAGATTGTAGAGAAGGATATCAAGGAAGCTGGAAATATCACCACTGACGGTTACGAAATTCTTGGAAAACTGCTTAAAGGGGAGAGGAAGTCAGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020056-'50-56,'50-55,51-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079537=Toxin_R_bind_N=PU(35.4=94.6)
C2:
PF079537=Toxin_R_bind_N=FE(49.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCAATGGACTCCCTCCT
R:
TTTCGTAACCGTCAGTGGTGA
Band lengths:
245-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]