MmuEX6067496 @ mm10
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79619941-79628509:-
Coord C1 exon
chr9:79628367-79628509
Coord A exon
chr9:79626989-79627098
Coord C2 exon
chr9:79619941-79620090
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGATCTTATCTTGATTGCAGCTT
3' ss Score
7.23
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AGAACTGCATCCAAATGGACTCCCTCCTTCGTACACGATTATATTATTATTTAGACTTCTCCCAGAAACTCCTAGTGACCCCTTTGCAATTTGGCAAATTACAGACAGAGACTACAGACCACAAGTTGGAGTGATTGCAGATC
Seq A exon
CTTCCAGCAAGACACTATCTTTCTTTAATAAGGATACAAGAGGGGAGGTACAAACTGTTACATTTGACACAGATGAAGTGAAGACATTATTTTATGGAAGCTTTCATAAG
Seq C2 exon
GTCCATATTGTAGTGACCTCAAAGAGTGTTAAGATTTATATTGACTGCTATGAAATTATAGAAAAAGACATCAAAGAAGCTGGAAATATAACAACTGATGGCTACGAAATTCTTGGAAAACTTCTTAAAGGAGAGAGGAAGTCAGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'64-65,'64-64,65-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTCCCTCCTTCGTACAC
R:
TCCAAGAATTTCGTAGCCATCAGT
Band lengths:
245-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types