GgaEX7003278 @ galGal4
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
collagen alpha-1(XII) chain precursor [Source:RefSeq peptide;Acc:NP_990352]
Coordinates
chr3:80282852-80289707:+
Coord C1 exon
chr3:80282852-80282994
Coord A exon
chr3:80283362-80283471
Coord C2 exon
chr3:80289558-80289707
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTATTTTATTTTTTTGCAGCTG
3' ss Score
9.69
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GGAGATTCACCCAGAGGGACTGCCACAGGCATACACTATCATCATGTTATTCCGTCTTCTGCCTGAATCCCCCAGTGAACCTTTTGCTATTTGGCAGATTACAGACAGAGATTACAAGCCACAAGTTGGAGTTGTGCTTGATC
Seq A exon
CTGGCAGCAAAGTGTTGTCATTCTTTAACAAGGATACAAGGGGAGAAGTTCAAACTGTAACTTTTGATAATGATGAAGTAAAGAAAATCTTTTATGGAAGCTTCCACAAG
Seq C2 exon
GTTCATATTGTTGTCACTTCATCAAATGTTAAGATTTACATTGACTGCAGTGAAATACTGGAAAAGCCAATTAAGGAGGCTGGGAATATCACAACTGATGGCTATGAAATACTTGGGAAACTTCTGAAAGGTGACCGGAGATCAGCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'74-67,'74-65,75-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079537=Toxin_R_bind_N=PU(0.1=0.0)
A:
PF079537=Toxin_R_bind_N=PU(36.0=97.3)
C2:
PF079537=Toxin_R_bind_N=FE(49.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGTCTTCTGCCTGAATCC
R:
TTGCTGATCTCCGGTCACCTT
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]