RnoEX6036677 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87062623-87070457:-
Coord C1 exon
chr8:87070315-87070457
Coord A exon
chr8:87069010-87069119
Coord C2 exon
chr8:87062623-87062772
Length
110 bp
Sequences
Splice sites
3' ss Seq
CAATCTTATCTTGATTGCAGCTT
3' ss Score
6.22
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AGAACTCCATCCGAATGGACTCCCCCCTTCATATACGATTATATTATTGTTTAGACTTCTCCCAGAAACTCCTAGTGACCCCTTTGCAATTTGGCAAATTACAGACAGAGACTACAGACCACAAGTTGGAGTGATTGCAGATC
Seq A exon
CTTCTAGCAAGACACTGTCTTTCTTTAATAAGGATACAAGAGGCGAGGTACAGACTGTTACATTTGATGCAGATGAAGCGAAGACCTTGTTTTATGGAAGCTTTCATAAG
Seq C2 exon
GTCCATATTGTAGTGACCTCAAAGAGTGTTAAGATTTATATTGACTGCTATGAAATTGTAGAAAAAGACATCAAAGAAGCTGGAAATATAACAACTGATGGCTATGAAATTCTTGGAAAACTTCTTAAAGGAGAGAGGAAATCAGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'70-78,'70-76,71-78=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079537=Toxin_R_bind_N=PU(35.4=94.6)
C2:
PF079537=Toxin_R_bind_N=FE(49.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACTTCTCCCAGAAACTCCT
R:
TGTGGCTGATTTCCTCTCTCCT
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]