MmuEX6069155 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108954330-108955536:+
Coord C1 exon
chr9:108954330-108954510
Coord A exon
chr9:108955195-108955268
Coord C2 exon
chr9:108955443-108955536
Length
74 bp
Sequences
Splice sites
3' ss Seq
ACCCCGTTTCCTCCCCTCAGGAC
3' ss Score
12.49
5' ss Seq
AAGGTGGTA
5' ss Score
-0.15
Exon sequences
Seq C1 exon
TGACCTGCACACGCCTTTATGCTGCTGACATCGTGTTCTTACTCGATGGCTCGTCGTCCATTGGCCGCAGCAACTTTCGAGAAGTGCGAGGATTCCTGGAGGGGCTGGTGCTGCCTTTCTCAGGAGCAGCCAGTGCACAGGGCGTCCGGTTTGCCACAGTGCAGTACAGTGATGATCCACA
Seq A exon
GACAGAATTTGGTCTGGATACACTTGGCTCTGGGAGTGACACCATCCGAGCCATCCGTGAGCTCAGCTATAAAG
Seq C2 exon
GTCTGCATCCTGATCACAGATGGGAAATCCCAAGATTTAGTGGACACAGCTGCCCAAAAGCTGAAGGGGCAGGGAGTCAAGCTGTTTGCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'2-5,'2-4,3-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(29.3=83.6)
A:
PF0009223=VWA=FE(30.5=100)
C2:
PF0009223=VWA=FE(17.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTACTCGATGGCTCGTCGT
R:
CCCATCTGTGATCAGGATGCA
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types