GgaEX7007795 @ galGal4
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr12:9064701-9065299:+
Coord C1 exon
chr12:9064701-9064881
Coord A exon
chr12:9064966-9065125
Coord C2 exon
chr12:9065206-9065299
Length
160 bp
Sequences
Splice sites
3' ss Seq
ATGTGTCCTGATGTCCCCAGGGT
3' ss Score
9.47
5' ss Seq
AAGGTATCG
5' ss Score
8.7
Exon sequences
Seq C1 exon
TGGTGTGCGAGAACGTGCTGGAGGCCGACATCGCCTTCCTGGTGGACGGCTCGTCCAGCATTGGCCGGAACAACTTCCGTGCCATCCGCACCTTCGTGGAGGACCTGGTGTCACCCTTTGTGCACGTGGTGGGCGAGAAGGCGGTGCGCTTCGCTGTGGTGCAGTACAGCGACGATCCACG
Seq A exon
GGTGGAGTTTGGCTTCTCCCAGCACATCAATGGCACGGGCATCCAGAAGGCCATCCAGCAGCTGAGCTACAAAGGTGGTAACACACGGACTGGCGCTGGGCTGCGCTACATCTCTGACAACTTCTTTGGTCCCACGCAACTCCGGCCCGGGGTCCCAAAG
Seq C2 exon
ATCTGCATCCTCATTACGGATGGCAAGTCCCAGGATGATGCTGAACAGCCGGCGCTGAGACTGAAGAGCCTGGGCATCAAGGTCTTTGCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(29.3=83.6)
A:
PF0009223=VWA=FE(30.5=100)
C2:
PF0009223=VWA=FE(17.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCGCCTTCCTGGTGGA
R:
AGCAAAGACCTTGATGCCCAG
Band lengths:
245-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]