DreEX0023496 @ danRer10
Exon Skipping
Gene
ENSDARG00000021720 | col7a1
Description
collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]
Coordinates
chr6:40282411-40285805:-
Coord C1 exon
chr6:40285625-40285805
Coord A exon
chr6:40283799-40283955
Coord C2 exon
chr6:40282411-40282504
Length
157 bp
Sequences
Splice sites
3' ss Seq
GTGAATTTTCTGACTATAAGGGT
3' ss Score
3.67
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCAGTGCAATGATGTTGTTGCAGCAGACGTTGTTTTCCTAGTTGATGGGTCATCCAGTATTGGCCGGGCCAATTTTATGTTGGTCAAGAGTTTCATGGCAGGCATTGTCAAACCCTTTGCCAAAGCAGTAGGACCGAATGGCATCCGCTTTGGAGCTGTACAGTACAGCGATACCGCCAG
Seq A exon
GGTGGAGTTTACATTCACTGCATACCTGAATGGCACTGAGCTCATTACTGCTGTAGAGAATATCAATTATAAAGGGGGAAACACACGCACTGGAGCTGGTCTCAAATACATCGCAGACAACTTCTTCAGCCCGGCCTCTATCAGAGATGTACCCAAG
Seq C2 exon
ATCTCTATTCTCATTACTGATGGTAAATCTCAGGACAATGTGCTTGAACCTTCTCAAAAGCTGCGTGGTCTCGGAGTCAAAATATTTGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021720-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(29.5=83.6)
A:
PF0009223=VWA=FE(30.1=100)
C2:
PF0009223=VWA=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCAGACGTTGTTTTCCT
R:
ATTTTGACTCCGAGACCACGC
Band lengths:
245-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]