MmuEX6069155 @ mm9
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108856375-108857581:+
Coord C1 exon
chr9:108856375-108856555
Coord A exon
chr9:108857240-108857399
Coord C2 exon
chr9:108857488-108857581
Length
160 bp
Sequences
Splice sites
3' ss Seq
ACCCCGTTTCCTCCCCTCAGGAC
3' ss Score
12.49
5' ss Seq
AAGGTGTTC
5' ss Score
1.14
Exon sequences
Seq C1 exon
TGACCTGCACACGCCTTTATGCTGCTGACATCGTGTTCTTACTCGATGGCTCGTCGTCCATTGGCCGCAGCAACTTTCGAGAAGTGCGAGGATTCCTGGAGGGGCTGGTGCTGCCTTTCTCAGGAGCAGCCAGTGCACAGGGCGTCCGGTTTGCCACAGTGCAGTACAGTGATGATCCACA
Seq A exon
GACAGAATTTGGTCTGGATACACTTGGCTCTGGGAGTGACACCATCCGAGCCATCCGTGAGCTCAGCTATAAAGGTGGTAACACTCGCACGGGGGCCGCTCTTCACCACGTTTCTGACCGTGTCTTCCTGCCTCGTCTAACACGTCCTGGTGTCCCCAAG
Seq C2 exon
GTCTGCATCCTGATCACAGATGGGAAATCCCAAGATTTAGTGGACACAGCTGCCCAAAAGCTGAAGGGGCAGGGAGTCAAGCTGTTTGCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'2-4,'2-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(29.3=83.6)
A:
PF0009223=VWA=FE(30.5=100)
C2:
PF0009223=VWA=FE(17.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTGACATCGTGTTCTT
R:
CAAACAGCTTGACTCCCTGCC
Band lengths:
250-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: