RnoEX0023519 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117695170-117696405:+
Coord C1 exon
chr8:117695170-117695350
Coord A exon
chr8:117696066-117696225
Coord C2 exon
chr8:117696312-117696405
Length
160 bp
Sequences
Splice sites
3' ss Seq
ACCCTGCTTTCTCCCCTCAGGAC
3' ss Score
13.1
5' ss Seq
AAGGTGTTC
5' ss Score
1.14
Exon sequences
Seq C1 exon
TGACCTGCACCCGCCTTTATGCTGCTGACATTGTGTTCTTGATTGACGGCTCCTCGTCCATTGGCCGCAGCAACTTTCGAGAAGTGCGGGGATTCCTGGAGGGGCTGGTGCTGCCTTTCTCAGGAGCAGCCAATGCACAGGGCGTCCGATTTGCAACAGTGCAGTACAGTGATGATCCACA
Seq A exon
GACAGAATTTGGTCTGGATACACTTGGCTCTGGGGGTGACACCATTCGTGCCATCCGGGAGCTCAGCTATAAGGGTGGTAACACTCGAACGGGGGCTGCTCTTCTCCACGTTTCCGACCGGGTCTTCCTGCCTCATCTAACACGTCCTGGCATCCCCAAG
Seq C2 exon
GTCTGTATCCTGATCACAGATGGGAAATCCCAGGACTTAGTGGACACAGCTGCCCAAAAACTGAAGAGGCAGGGGGTCAAGCTGTTTGCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(29.3=83.6)
A:
PF0009223=VWA=FE(30.5=100)
C2:
PF0009223=VWA=FE(17.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCTTTATGCTGCTGACAT
R:
TGCCTCTTCAGTTTTTGGGCA
Band lengths:
242-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]