BtaEX6095730 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51860203-51861384:+
Coord C1 exon
chr22:51860203-51860389
Coord A exon
chr22:51861046-51861205
Coord C2 exon
chr22:51861291-51861384
Length
160 bp
Sequences
Splice sites
3' ss Seq
TGCCACCTGCCTCCCCACAGGAC
3' ss Score
12.07
5' ss Seq
AAGGTGATC
5' ss Score
4.41
Exon sequences
Seq C1 exon
CCACAGTGAGCTGCACGCGCCTCTACGCCGCTGACATCGTGTTCCTCCTTGACGGCTCCTCGTCCATCGGCCGAAGCAACTTCCGCGAAGTGCGGGGTTTCCTTGAGGGGCTGGTGCTGCCCTTCTCCGGGGCAGCTGGGGCACAGGGTGTGCGCTTCGCGGCCGTGCAGTACAGCGACGACCCACG
Seq A exon
GACAGAATTTGACCTGGATGCACTTGGCTCAGGCGGAGATGTGATCCGTGCCATCCGAGAGCTCAGCTACAAGGGGGGCAACACGCGCACAGGGGCCGCGATTCTCCACGTGGCTGACCGCGTCTTCCTGCCCCAGCTGGCCCGACCTGGTGTCCCCAAG
Seq C2 exon
GTCTGTATCCTCATCACAGACGGGAAGTCCCAGGACATGGTGGACACAGCTGCCCAGAGGTTGAAGGGGCAGGGAGTCAAGCTGTTTGCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(29.5=81.0)
A:
PF0009223=VWA=FE(30.6=100)
C2:
PF0009223=VWA=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTGTTCCTCCTTGACGG
R:
GCAAACAGCTTGACTCCCTGC
Band lengths:
242-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]