MmuEX6073794 @ mm9
Exon Skipping
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:121860753-121865339:+
Coord C1 exon
chr3:121860753-121860876
Coord A exon
chr3:121861232-121861361
Coord C2 exon
chr3:121865219-121865339
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCTGTTGCTTCTATTCTCAGGTG
3' ss Score
10.11
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ACGCTGCTCAGGTTCAATGCCATGTTGAGGAAGTTGCTCATTGTCTTCCCCCACTTCTGCCTGGGCAGGGGCCTCATTGACCTGGCACTGAGCCAAGCTGTGACAGACGTCTATGCCCAGTTTG
Seq A exon
GTGAGGAGTACTCTGCAAACCCATTCCAGTGGGACCTGATTGGGAAGAACCTGGTTGCTATGGCAATAGAAGGGGTGGTATACTTCCTTCTGACCCTGCTCATCCAACACCATTTTTTCCTCACCCGGTG
Seq C2 exon
GATCGCTGAGCCTGCTAGAGAGCCCGTTTTTGATGAAGATGACGATGTGGCTGAAGAAAGACAAAGAGTTATGAGTGGGGGAAATAAAACCGACATCTTAAAGCTAAACGAACTAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125-'50-51,'50-50,51-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.122
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(13.7=100)
A:
PF126982=ABC2_membrane_3=PD(11.0=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCAGGTTCAATGCCAT
R:
CTTGGTTAGTTCGTTTAGCTTTAAGA
Band lengths:
243-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: