BtaEX6016494 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49669083-49673217:+
Coord C1 exon
chr3:49669083-49669206
Coord A exon
chr3:49669786-49669915
Coord C2 exon
chr3:49673097-49673217
Length
130 bp
Sequences
Splice sites
3' ss Seq
CTGGTGGTCTGCATCCCCAGGTG
3' ss Score
8.1
5' ss Seq
ATGGTATGC
5' ss Score
7.14
Exon sequences
Seq C1 exon
ACGCTGCTCAGGATCAATGCCATGCTGAGGAAGCTGCTCATTATCTTCCCCCACTTCTGCCTGGGCCGGGGTCTCATTGACCTGGCACTGAGCCAGGCAGTGACAGACGTCTATGCCCGGTTTG
Seq A exon
GTGAGGAGCACTCTTCAAATCCATTCCAGTGGGACCTGATTGGGAAGAACCTGGCTGCCATGGCAGTAGAAGGTGTGGTGTACTTCCTCTTGACGCTCCTCATCCAATACCAGTTCTTCTTCAGCCGATG
Seq C2 exon
GACTACCGAGCCTGCAAAGGAGCCCATCACAGATGAAGATGATGATGTGGCTGAAGAAAGGCAGAGAATTATTAGTGGAGGAAATAAAACTGATATCTTAAGGCTAAATGAACTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010-'47-41,'47-40,48-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.293
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.5=100)
A:
PF126982=ABC2_membrane_3=PD(10.1=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCAGGATCAATGCCAT
R:
TTGGTGAGTTCATTTAGCCTTAAGA
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]