DreEX6095544 @ danRer10
Exon Skipping
Gene
ENSDARG00000057169 | abca4a
Description
ATP-binding cassette, sub-family A (ABC1), member 4a [Source:ZFIN;Acc:ZDB-GENE-050517-3]
Coordinates
chr24:28554635-28558290:+
Coord C1 exon
chr24:28554635-28554758
Coord A exon
chr24:28557948-28558077
Coord C2 exon
chr24:28558170-28558290
Length
130 bp
Sequences
Splice sites
3' ss Seq
GTTTATCTCGTGCATCTAAGGTG
3' ss Score
5.57
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GCTCTGTATAAGTGTAACCAGGTGCTGAAGAAGGCTTTGCTTGTCTTTCCTCACTTCTGTTTGGGCCGCGGGCTCATTGACATGGCGATGAACCAGGCCGTGATGGACGTGTATGCACGCTTTG
Seq A exon
GTGAGGACTTCAGTCTGGATCCATTCAGCTGGGACTTTGTTGGAGAAAATTTGACTTTCATGGCAGTAGAGGGATTTGTGTATTTCATCCTGAACATTTTGATACAGTACCGGTTCTTCCTGGATCACTG
Seq C2 exon
GATGTCCGATTTTAAGAAGCCACCAATAACTGATGAAGATGTGGATGTGGCCAAAGAGAGAGAGAGAATTTATAAAGGAGGAAGCTCCAATGACATTCTTCAGATTAAAGACTTGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057169-'46-47,'46-46,48-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.7=100)
A:
PF126982=ABC2_membrane_3=PD(9.4=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGTATAAGTGTAACCAGGTGC
R:
TGACAAGTCTTTAATCTGAAGAATGT
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]