GgaEX1005391 @ galGal4
Exon Skipping
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12672957-12674939:+
Coord C1 exon
chr8:12672957-12673080
Coord A exon
chr8:12673804-12673933
Coord C2 exon
chr8:12674819-12674939
Length
130 bp
Sequences
Splice sites
3' ss Seq
GGTGCTCCACCTCTCCAAAGGTG
3' ss Score
7.18
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ACTTTGCTGAAATTTAATAAAACTTTGAAAAATGTGCTAATTGTCTTCCCACACTTTTGCCTGGGTCGTGGCCTCATTGACTTGGCCATAAACCAAGCTGTGAGTGAAGTATATGCCAGGTTTG
Seq A exon
GTGAGGAGCATGTTTCTAATCCTTTTCAGTGGGACTTCATTGGGAAGAACCTGGTTGCCATGGCTGTTCAAGGAGTAGCATTCTTCACTCTGAATCTCCTTATGCAGCACCAATTATTCCCCTCAAGATG
Seq C2 exon
GTTTGCTGAGACTGCCAAGTCACCTATTATTGATGAAGATGAGGATGTTGCAGAAGAAAGAAAAAGAATTCTGAATGGAGGGAACAAAACAAATATCTTAGAATTACAGGAACTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'46-49,'46-47,47-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.5=100)
A:
PF126982=ABC2_membrane_3=PD(10.1=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAATGTGCTAATTGTCTTCCCA
R:
TGGTGAGTTCCTGTAATTCTAAGA
Band lengths:
218-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]