DreEX6026085 @ danRer10
Exon Skipping
Gene
ENSDARG00000062661 | abca4b
Description
ATP-binding cassette, sub-family A (ABC1), member 4b [Source:ZFIN;Acc:ZDB-GENE-050517-4]
Coordinates
chr2:15615244-15617395:+
Coord C1 exon
chr2:15615244-15615367
Coord A exon
chr2:15616950-15617079
Coord C2 exon
chr2:15617275-15617395
Length
130 bp
Sequences
Splice sites
3' ss Seq
CTTGATGCCTTTTGTCACAGGAG
3' ss Score
6.25
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
TCTCTGCTGATGTTTAATGAGGTGTTGAAGAAGGTGTTACTGGTGTTTCCTCACTTCTGTCTTGGCCGAGGTCTCATTGATATGGCCATGAACCAGGCTGTGACTGACGTTTATGCTCGATTTG
Seq A exon
GAGAGGAGTTTTCCATGGATCCGTTCAGATGGAACTTTGTGGGGAAGAATCTCTTCTGTATGGCTGTGGAGGGTTTTGTCTATTTCATTTTTAACCTCCTCATCCAGTACAAATTTTTCCTTCATCACTG
Seq C2 exon
GATATCAGACTATGGGATGAGCCTAGGTACAGATGAAGATGATGATGTAGCTCAGGAGAGAGAGCGCATTTACAAAGGGGGGAATAAAAATGACATCCTTCTAATCCGAGACTTGTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062661-'47-45,'47-44,48-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.073
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.7=100)
A:
PF126982=ABC2_membrane_3=PD(8.6=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGCTGATGTTTAATGAGGTGT
R:
TGACAAGTCTCGGATTAGAAGGA
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]