MmuEX6101984 @ mm9
Exon Skipping
Gene
ENSMUSG00000044308 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:MGI Symbol;Acc:MGI:1861100]
Coordinates
chr2:69856450-69859308:+
Coord C1 exon
chr2:69856450-69856629
Coord A exon
chr2:69858508-69858717
Coord C2 exon
chr2:69859169-69859308
Length
210 bp
Sequences
Splice sites
3' ss Seq
ACTATTTTTGGATGTTTTAGGCC
3' ss Score
7.76
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GAAGAAGAAGAATTTTCAGTCCTTGCCAGCTGCCTGGGACTTCTGCCAACTTTTTACCAAACAGATCACCCGTTCATCAGTGCCTCGTGTCTGGACTGGCCAGTTGCAGCGTTTGACATTATAACTCAGTGGTGTTTTGAGATAACATCATTTACGGAGAGACACGCAGAGCAAGGAAAG
Seq A exon
GCCTTGCTTATCCAAGAATCAAGATGGAAGTTACCACACCTGTTACAGTTGCCTGAGAATTACAACACTATTTTTCAGTACTATCATAGAAAAACCTGCAGTGTCTGCACCAAGGTTCCTAAAGACCCAGCTGTTTGCCTCGTCTGCGGCACTTTCGTATGCCTGAAAGGCCTGTGCTGCAAGCAGCAAAGTTACTGTGAATGTGTGCTG
Seq C2 exon
CATTCTCAGAATTGTGGTGCAGGAACAGGAATTTTCCTTTTAATCAACGCGTCAGTGATCATCATCATCCGAGGCCACCGCTTTTGCCTCTGGGGTTCCGTCTACTTGGATGCTCATGGAGAAGAGGACCGGGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044308-'51-62,'51-60,53-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCAGTCCTTGCCAGCTGC
R:
CGGTCCTCTTCTCCATGAGCA
Band lengths:
299-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: