GgaEX6042391 @ galGal4
Exon Skipping
Gene
ENSGALG00000009608 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr7:17977873-17980737:-
Coord C1 exon
chr7:17980555-17980737
Coord A exon
chr7:17979176-17979385
Coord C2 exon
chr7:17977873-17978012
Length
210 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTCTTTCTTTCTAGGCT
3' ss Score
11.75
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CAAAAGGAAGATGAAGAATTCACAGTTCTTGCAAGCTGTCTGGGTCTGTTACCATCTTTTCAGTCATCTGATGAATTCACCAGTGCCTCTTGTCTTGATTGGCCAGTGCCAGCATTTGACATGATATCACAGTGGTGCTCAGAGTTGGCTTCATTTGCAGACAGACATCCAGATCAAGTAAAG
Seq A exon
GCTTTGCTTATCCAGGAGCCTAAGTGGGACTTGCCGCGTCTCCTTCAGTTGCCTGAGAATTATAATACCATTTTTCAGTATTATCACAGAAAGACTTGTACTGTTTGTACCAAGGTTCCTAAAGATCCTGCTGTTTGTCTGGTTTGTGGTACTTTTGTATGCTTGAAAGGATTATGCTGCAAACAACAGAGTTACTGCGAATGTGTACTG
Seq C2 exon
CATTCACAAAACTGTGGAGCTGGGACAGGAATATTTCTTTTGATTAATGCGTCTGTAATCATCATCATAAGAGGCCATCGTTTCTGCCTTTGGGGCTCTGTTTATCTAGATGCACATGGTGAAGAAGACAGAGATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608-'59-72,'59-71,60-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTTGCAAGCTGTCTGGGT
R:
CTCTGTCTTCTTCACCATGTGCA
Band lengths:
292-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]