BtaEX6009178 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020296 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:26363319-26366408:-
Coord C1 exon
chr2:26366229-26366408
Coord A exon
chr2:26364060-26364269
Coord C2 exon
chr2:26363319-26363458
Length
210 bp
Sequences
Splice sites
3' ss Seq
TATTTTGAATAATGTTTTAGGCG
3' ss Score
5.58
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GAAGAAGAAGAATTTTCAGTTCTTTCCAGCTGCCTGGGACTTCTGCCAACATTCTACCAAACAGAACATCCATTCATCAGTGCCTCCTGTCTGGATTGGCCAGTTCCGGCATTTGATATTATATCTCAGTGGTGTTTTGAGATAAATTCATTTACTGAAAGACATGCTGAACAAGGAAAG
Seq A exon
GCGTTGCTTATCCAAGAGTCAAAATGGAAATTGCCACACCTTCTACAGTTGCCTGAAAATTATAACACCATTTTCCAGTACTACCACAGAAAAACCTGTAGTGTCTGCACCAAGGTTCCTAAAGACCCTGCCGTTTGCCTTGTTTGTGGTACTTTTGTATGCCTGAAAGGACTTTGCTGCAAGCAACAAAGTTACTGTGAATGTGTATTG
Seq C2 exon
CATTCTCAGAACTGTGGTGCTGGAACAGGGATTTTCCTTTTGATCAATGCATCAGTGATTATCATCATTCGAGGCCACCGCTTCTGCCTCTGGGGTTCTGTGTATTTGGATGCTCATGGAGAGGAAGACCGAGATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020296-'50-51,'50-49,52-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTTCTTTCCAGCTGCCTG
R:
TCGGTCTTCCTCTCCATGAGC
Band lengths:
297-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]