HsaEX0068980 @ hg38
Exon Skipping
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:170061318-170084131:+
Coord C1 exon
chr2:170061318-170061443
Coord A exon
chr2:170079814-170080023
Coord C2 exon
chr2:170081726-170084131
Length
210 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGGATAATGTTTTAGGCC
3' ss Score
6.22
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTTAACCCTATTGCTTGGTCTCCTGAATCCATGGAAAAATGCTTACAGGACTTCTGCTTACCTTTTCTCAGAATCACCAGCCTTCTTCAGCACCACCTTTTTGGGGAAGATTTACCTAGCTGCCAG
Seq A exon
GCCTTGCTTATCCAAGAGTCAAAATGGAAATTACCACACCTACTACAGTTGCCTGAGAATTATAACACCATTTTTCAGTACTACCACAGAAAAACCTGTAGTGTCTGCACCAAGGTTCCTAAAGATCCTGCTGTTTGCCTTGTGTGTGGTACTTTTGTATGCCTGAAAGGACTTTGCTGCAAGCAACAAAGTTACTGTGAATGTGTACTG
Seq C2 exon
GCGAGGCAAACCTCTCTACATTTGTAAGGAAAGATACAAAGTTCTTGAGCAACAGTGGATTTCTCATACTTTTGATCACATCAATAAAAGATGGGGTCCACATTACAATGGGCTGTGACTCTCCACCTCAGCATTGCATCGTATCATCATTTTCGCTACGAATTTATTTTTCAACAATAAGCTTTAACTTAATTTGGGGGATTAACACTTTTGCTGAGGGAGAAAAAGAAAACATACATTATGAAGCCTTTCCAAAATTAGGTGCTTGGTAATCACGTTAATGGTATAATTTTTTTTTTTTAATATCTGGAGAACATTAATAACAAGTTAAATTATTCTTTAGTGGTCATTTTTTAAGTGCACAATTAATAAGAAGCACAACTTGTTCACAAACTCATTCAGAAATGATTCTCCCAACAATGCGTATCAGCTATTCATTGATACTTAGAGTGGGTGTGATTTATTTGACATTTTACTGCTTCTTTCTGTCTGTGTGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357_MULTIEX1-4/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000272793fB29259
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCACCTTTTTGGGGAAGA
R:
CCAAGCACCTAATTTTGGAAAGGC
Band lengths:
306-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development