RnoEX0096087 @ rn6
Exon Skipping
Gene
ENSRNOG00000008616 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:RGD Symbol;Acc:1565257]
Coordinates
chr3:56277885-56280662:+
Coord C1 exon
chr3:56277885-56278064
Coord A exon
chr3:56279992-56280123
Coord C2 exon
chr3:56280523-56280662
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATTACAACACTATTTTTCAGTAC
3' ss Score
3.85
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GAAGAAGAGGAATTTTCAGTCCTTGCCAGCTGCCTGGGACTTCTGCCAACTTTTTACCAAACAGATCACCCATTCATCAGTGCCTCGTGTCTGGACTGGCCAGTTGCAGCATTTGACATTATAACTCAGTGGTGTTTTGAGATAAGATCATTTACAGAGAGGCATGCAGAACAAGGGAAG
Seq A exon
TACTACCACAGAAAAACCTGCAGTGTCTGCACCAAGGTTCCTAAAGACCCAGCTGTTTGTCTTGTGTGTGGCGCCTTCGTCTGCCTGAAAGGCCTGTGCTGCAAGCAGCAGAGCTACTGTGAATGTGTGCTG
Seq C2 exon
CATTCTCAGAATTGTGGTGCCGGAACAGGGATTTTCCTTTTAATCAATGCGTCAGTGATTATCATCATCCGAGGCCACCGCTTCTGCCTCTGGGGCTCTGTCTATCTGGATGCTCATGGAGAAGAGGACCGGGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008616-'64-71,'64-70,65-71
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTCATCAGTGCCTCGTGT
R:
CGGTCCTCTTCTCCATGAGCA
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]