HsaEX0068980 @ hg19
Exon Skipping
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:30467]
Coordinates
chr2:170917828-170940637:+
Coord C1 exon
chr2:170917828-170917953
Coord A exon
chr2:170936324-170936533
Coord C2 exon
chr2:170938236-170940637
Length
210 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGGATAATGTTTTAGGCC
3' ss Score
6.22
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTTAACCCTATTGCTTGGTCTCCTGAATCCATGGAAAAATGCTTACAGGACTTCTGCTTACCTTTTCTCAGAATCACCAGCCTTCTTCAGCACCACCTTTTTGGGGAAGATTTACCTAGCTGCCAG
Seq A exon
GCCTTGCTTATCCAAGAGTCAAAATGGAAATTACCACACCTACTACAGTTGCCTGAGAATTATAACACCATTTTTCAGTACTACCACAGAAAAACCTGTAGTGTCTGCACCAAGGTTCCTAAAGATCCTGCTGTTTGCCTTGTGTGTGGTACTTTTGTATGCCTGAAAGGACTTTGCTGCAAGCAACAAAGTTACTGTGAATGTGTACTG
Seq C2 exon
GCGAGGCAAACCTCTCTACATTTGTAAGGAAAGATACAAAGTTCTTGAGCAACAGTGGATTTCTCATACTTTTGATCACATCAATAAAAGATGGGGTCCACATTACAATGGGCTGTGACTCTCCACCTCAGCATTGCATCGTATCATCATTTTCGCTACGAATTTATTTTTCAACAATAAGCTTTAACTTAATTTGGGGGATTAACACTTTTGCTGAGGGAGAAAAAGAAAACATACATTATGAAGCCTTTCCAAAATTAGGTGCTTGGTAATCACGTTAATGGTATAATTTTTTTTTTTTAATATCTGGAGAACATTAATAACAAGTTAAATTATTCTTTAGTGGTCATTTTTTAAGTGCACAATTAATAAGAAGCACAACTTGTTCACAAACTCATTCAGAAATGATTCTCCCAACAATGCGTATCAGCTATTCATTGATACTTAGAGTGGGTGTGATTTATTTGACATTTTACTGCTTCTTTCTGTCTGTGTGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357_MULTIEX1-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCACCTTTTTGGGGAAGA
R:
CCAAGCACCTAATTTTGGAAAGGC
Band lengths:
306-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)