DreEX0083004 @ danRer10
Exon Skipping
Gene
ENSDARG00000042508 | ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1473]
Coordinates
chr9:3930052-3934544:-
Coord C1 exon
chr9:3934368-3934544
Coord A exon
chr9:3931759-3931968
Coord C2 exon
chr9:3930052-3930191
Length
210 bp
Sequences
Splice sites
3' ss Seq
AACATGTGGTGTCTCCTCAGTCT
3' ss Score
6.57
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGGAGGAGGAGTTCTCTCTGCTGACGCGCTGTCTGGGTTTAGCTGCTTCTGTTCAGTGCAGTGGATCCATGAGCAGCGCAGCGTGTCTGGAGTGGAACATCAGTGCTTTTGACTTGATCAGTCAGTGGTGCTCAGAAGTCGTCGCTCTGTCCGACACGCCCTCCCAGCAGTCTGCG
Seq A exon
TCTCTGTTAGGTCAGGACCCGCAGTGGGCTGCTCCTCGTCTCCTGCAGCTTCCCGACAATTACAACACCATCTTCCAGTACTACCACAGGAAATCCTGCAGCAGCTGCGGAAAGACCCCCAAAGACCCTGCGCTGTGCCTGGTGTGCGGCGCGTTCGTCTGCCTGAAGGGTCATTGCTGTAAGCAGCAGGGCGTCTGCGAGTGTGTGCTG
Seq C2 exon
CACTCCCAGCACTGCGGAGCGGCGACTGGTATCTTCCTCCTGATAAACGCATCCGTCATCATTATCATCCGAGGGCATCGCTTCTGCCTGTGGGGGTCTGTGTATCTGGATGCTCACGGAGAGGAAGACCGAGACCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042508-'22-25,'22-24,23-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAGGAGTTCTCTCTGC
R:
TCTTCCTCTCCGTGAGCATCC
Band lengths:
304-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]