RnoALTD0026731-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000005309 | Scn8a
Description
sodium voltage-gated channel alpha subunit 8 [Source:RGD Symbol;Acc:3638]
Coordinates
chr7:142624546-142645126:+
Coord C1 exon
chr7:142624546-142624550
Coord A exon
chr7:142624551-142624580
Coord C2 exon
chr7:142645087-142645126
Length
30 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGG
5' ss Score
5.87
3' ss Seq
ATCCCCCCCCCCTCCTCTAGGCA
3' ss Score
11.18
Exon sequences
Seq C1 exon
CTGAG
Seq A exon
GTGAAAATAGATAAGGCAGCTACGGACAGC
Seq C2 exon
GCAACGACTGAGGTGGAAATTAAGAAGAAAGGCCCTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005309-30-27,31-27-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.305 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0310514=SPX=PD(31.9=54.6),PF119333=DUF3451=FE(47.8=100)
A:
NA
C2:
PF119333=DUF3451=FE(5.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]