RnoEX0021856 @ rn6
Exon Skipping
Gene
ENSRNOG00000003714 | Clk4
Description
CDC-like kinase 4 [Source:RGD Symbol;Acc:1310274]
Coordinates
chr10:36725383-36727196:+
Coord C1 exon
chr10:36725383-36725605
Coord A exon
chr10:36726645-36726735
Coord C2 exon
chr10:36727130-36727196
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGCCCACTTGCCGTTCCAGAAG
3' ss Score
7.46
5' ss Seq
GATGTATAG
5' ss Score
-2.49
Exon sequences
Seq C1 exon
TCACTATTTAGAAGCAAGATGCTTGAATGAGAGAGATTATCGGGATCGGAGATACATTGATGAATACAGAAATGACTACTGTGAAGGATATGTTCCAAGACATTACCATAGAGACATTGAAAGCACTTACCGGATCCATTGCAGTAAATCCTCAGTCAGAAGCAGGAGAAGCAGCCCTAAAAGAAAACGTAACAGACACTGTGCGAGTCATCAGTCACATTCG
Seq A exon
AAGAGCCACCGAAGGAAAAGATCCAGGAGTATAGAGGATGATGAGGAGGGTCACCTGATCTGTCAAAGTGGAGACGTTCTAAGAGCAAGAT
Seq C2 exon
ATGAAATCGTGGACACTTTAGGTGAAGGGGCCTTTGGCAAAGTTGTAGAGTGCATTGATCATGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003714_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006920=Pkinase=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTACCGGATCCATTGCA
R:
TGCCATGATCAATGCACTCTACA
Band lengths:
167-258
Functional annotations
There are 1 annotated functions for this event
PMID: 31911676
[CRISPR screen]. Conserved poison exon with negative fitness/survivability impact when depleted: HeLa Depleted at 14 days (FC=0.725, FDR=0.000), PC9 No Change at 14 days (FC=1.106, FDR=0.829), Late Xenograft No change (FC=1.369, FDR=0.260).
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]