RnoEX6017113 @ rn6
Exon Skipping
Gene
ENSRNOG00000004966 | Slc38a11
Description
solute carrier family 38, member 11 [Source:RGD Symbol;Acc:1306005]
Coordinates
chr3:51371923-51386189:-
Coord C1 exon
chr3:51386077-51386189
Coord A exon
chr3:51382024-51382155
Coord C2 exon
chr3:51371923-51372180
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTGATCTGTTTTGTTGCCAGGTT
3' ss Score
9.12
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAGACTTGTTTGAAAATTACTGCAGAAGTGATGACCTGGTGACCTTTGGGAGGTTTTGTTACGGCATCACTGTTATTTTGACTTACCCAATTGAATGCTTTGTGACCAGAGAG
Seq A exon
GTTATTACCAATGTGTTTTTTGGTGGGGCCCTTTCATCGGTATTCCACGTCACCTTAACAGCGGCTATTGTTACTGCAGCCACACTGATATCGTTGCTGATTGATTGCCTTGGGATAGTTTTGGAACTCAAT
Seq C2 exon
GGTGTGCTCTGCGCGGCTCCTTTGATTTTTATCATCCCCTCAGCATGCTATCTGAAATTATCAGAAGAACCAAGAACGCACTCAGATAAGTTAATGGCCTGTGTCATGTTTCCCGTCGGTGCTGTGGTGATGGTGGCAGGGTTCGTCATGGCTATCACAAATCCTCAGGACTGCACCCACGGGCAGGAAATGTTCTACTGTTTTCCTGACAACATCTCCCTCACAAACATCTCCCATTCTCCTCGTCAACTGACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004966-'12-16,'12-14,13-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(11.0=100)
A:
PF0149013=Aa_trans=FE(11.1=100)
C2:
PF0149013=Aa_trans=PD(13.4=60.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGAGGTTTTGTTACGGCA
R:
GGGTGCAGTCCTGAGGATTTG
Band lengths:
246-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]