DmeEX6009297 @ dm6
Exon Skipping
Gene
FBgn0033368 | CG13743
Description
This gene is referred to in FlyBase by the symbol DmelCG13743 (FBgn0033368). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (3 unique). Gene sequence location is 2R:9044850..9060608. Its molecular function is described by: amino acid transmembrane transporter activity. It is involved in the biological process described with: amino acid transmembrane transport. 8 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: lethal - all die before end of pupal stage; some die during pupal stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in adult male stages.
Coordinates
chr2R:9044850-9048026:-
Coord C1 exon
chr2R:9047914-9048026
Coord A exon
chr2R:9047658-9047849
Coord C2 exon
chr2R:9044850-9046748
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTTTGGGCCATTCCCCACAGATT
3' ss Score
9.05
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GCGACCTGCTGGAGAACTACTGCTGGGATGACGACCTGATGAACTTCTCGCGTGTGCTCTTCTCCATATCGATACTCCTGACCTTCCCCATCGAGTGCTTCGTGTCCCGCGAG
Seq A exon
ATTGTGCGCGCCCTCGTCCATCGGTTCGTGCTGAAGGAGCCCATCAGCGAGTTCACCCAGGACAAGGACCCCAGCCTGGAGAAGGGGGCCATTATCGATGAGTACTCGAAAGCCATTACCATGGCCATCGTGTTCAGCGCCTTCGTCATCTCGCCCATGACCGACTGCCTGGGTTCGGTGCTGGAGCTGAAT
Seq C2 exon
GGTCTCCTGGCGGCCATTCCCCTGGCCTACATCCTGCCCGGCCTGGCCTACATTCAGATGGAGCCGCACGCCCTGCTCAGCCGGGAGAAGCTGCCCGCTCTGGGCCTGGTGGTCTTCGGAGCCCTGGTGACCATCTTGGGGGCGGCGGTGCTCCTGCCGGGTCTAATGGGCGGCGACTGCCGATCGGACATTGTGATGGGTTACTGCCGGCAGGAGTTTCAGAACACCACCTCCTCGAACTAAGTTAACGGAACGGAAGTCAGCCCACGATGTGGGGCGCGCGGGTTGGGATCGCATTTTTATGGTTTGGGTTTTTGGGTTGAAACTTCTGATTTGACCTTCGGTTAATACAGCTGCACCACGTCGCATCGAAAGAAACTTGTACCTGAGTCCCAGACGTTCAAAGTATCTGCGTAAGTAAGTAGTAGGCACAGTGTTGAATTGGATTAGTGGATAGCGGATAGCGGATGTGTGATACGGGCGAACCTCAGTACAAAGGC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0033368-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=PD(2.2=36.4)
A:
PF0149013=Aa_trans=FE(15.4=100)
C2:
PF0149013=Aa_trans=PD(12.5=63.0)
Main Inclusion Isoform:
FBpp0087743
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0300980
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGATACTCCTGACCTTCCCCA
R:
CATCACAATGTCCGATCGGCA
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)