BtaEX6009428 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007650 | SLC38A11
Description
Bos taurus solute carrier family 38, member 11 (SLC38A11), mRNA. [Source:RefSeq mRNA;Acc:NM_001031760]
Coordinates
chr2:31430586-31446946:+
Coord C1 exon
chr2:31430586-31430698
Coord A exon
chr2:31437282-31437413
Coord C2 exon
chr2:31446547-31446946
Length
132 bp
Sequences
Splice sites
3' ss Seq
AATCTGTTTCTATTTGGCAGGTA
3' ss Score
7.74
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAGACTTGTTTGAAAATTATTGCAGAAATGATGACTTGGTAACATTTGGAAGGTTTTGCTATGGAGTCACTGTCATTTTGACATACCCCATTGAATGCTTTGTGACTAGAGAG
Seq A exon
GTAATTGCCAATGTGTTTTTTGGTGGGAATCTTTCATCAGTTTGCCACATTATCGTAACTGTGGTTATCATTACCGTGGCCACACTTGTGTCACTGCTGATTGATTGCCTTGGAATAGTTTTAGAGCTCAAT
Seq C2 exon
GGCGTGCTCTGTGCAGCTCCCTTAATTTTTATCATTCCATCGGCATGTTATCTGAAGCTGTCTGAAGAACCCAGGACACACTCAGATAAGATTATGTCCTGCGTCATGCTTCCCATTGGTGCTGTGGTGATGGCTGTTGGATTCGTCATGGCAGTCACCAGCCCTCAAGACTGCAGCCACGGGCAGGAAATGTTCTATTGCTCCCCGGACAATTTCTCCCTCACAAACATTTCAATTTCTCATTTGCAACTGACAACACAACTTTCAATTTTAAACGTCAGTATCTTTCAGTGATTTGCCTCCTTTAAAAAAAAAATTCATTTTTATAGACTTCTAAATTGCATAATAACATTCACACATGTTTTAATCTCCATATTATAAAATTATTACTTTGGCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007650-'15-17,'15-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(9.5=100)
A:
PF0149013=Aa_trans=FE(11.0=100)
C2:
PF0149013=Aa_trans=PD(13.6=54.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCATTGAATGCTTTGTGACT
R:
GTGAGGGAGAAATTGTCCGGG
Band lengths:
253-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]