GgaEX0016578 @ galGal4
Exon Skipping
Gene
ENSGALG00000011052 | SLC38A11
Description
solute carrier family 38, member 11 [Source:HGNC Symbol;Acc:HGNC:26836]
Coordinates
chr7:19519055-19525264:+
Coord C1 exon
chr7:19519055-19519167
Coord A exon
chr7:19519774-19519905
Coord C2 exon
chr7:19522146-19525264
Length
132 bp
Sequences
Splice sites
3' ss Seq
AAGTTACGGTTCTGTTTCAGGTG
3' ss Score
8.53
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAGATATATTTGAAAACTACTGTAGAGATGACAACCTTGCTACATTTGGAAGGTTTTGTTATGGAGTTACTGTAATTCTGACCTTTCCTCTTGAATGTTTTGTCACCAGAGAG
Seq A exon
GTGATTGCCAATGTATTTTTCCATGGGAGCCTCTCAGCGGTTTTCCATATTGTTGTGACAGTAATTATCATTGCTGTGGCGACTGGTGTATCATTAGTGTATGACTGCCTTGGAATAGTTTTAGAGCTGAAT
Seq C2 exon
GGAGTTCTGAGTGCTACCCCACTTGTTTTTATCATCCCAACAGCGTGTTATCTAAGGCTGTCTGAAGAGCGATGGAACCATTCAGATAAACTCATCTCCTGCCTGATTCTTGCTGTTGGTGTGCTAGTGATGACAGTTGGGTTTGTTTTGACTATCTTGCATCCCCAGGAATGTAGCCATGGAAAAGAAATGTTCTACTGCTTTGCTAGTAATGTTTCTTTGTACAACAGTACACTTCCCCCATAGGTAATGCTCCAATCTCTGCACTAGATCAGGGGCATCTCCCAGGAAGCCATATGATCCAGTTTAAACATATCTGGAACAAAGATTTTGTTTTCACACATAACTGTATTTACCTCCTTGATTTTTATGCTGCCATCTTGTTTCAGACAAAGCTTAACTTTTGAAACAAACTCTCAGAGGTGCTTGTATAACTGACAAACCTATCAAAAAGGCTGTGTTTTTTTGTTATTAGGTCACCAATACAACTTAAACTAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011052_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(9.5=100)
A:
PF0149013=Aa_trans=FE(11.1=100)
C2:
PF0149013=Aa_trans=PD(13.4=63.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGCTACATTTGGAAGGTTTTGT
R:
GCTACATTCCTGGGGATGCAA
Band lengths:
256-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]