DreEX0072768 @ danRer10
Exon Skipping
Gene
ENSDARG00000040257 | slc38a11
Description
solute carrier family 38, member 11 [Source:ZFIN;Acc:ZDB-GENE-050417-122]
Coordinates
chr9:50329573-50335578:+
Coord C1 exon
chr9:50329573-50329685
Coord A exon
chr9:50333754-50333888
Coord C2 exon
chr9:50335270-50335578
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTGGTCTTGACTGTGTCCAGGTG
3' ss Score
6.72
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GTGATATATTTGAGAACTACTGCAGGTCTGATAACTTGGCTACATTCGGCCGGTTCTGCTATGGTGTCAGTATAATCACTACATTTCCTCTGGAGTGCTTTGTAACACGTGAG
Seq A exon
GTGATCTCCAATGCACTTTTTAAAGGAGGAGAACTCAGTAAATCTTCCCATGTCATCATAACCCTGGTGATCATATCAGCAACAACTGCCATTTCCCTTTCTTACGATTGCCTGGGTATTGTACTGGAACTAAAC
Seq C2 exon
GGTATTTTGAGCGCAGTACCGCTCATGTTCATCTTCCCCTCTGCCTGTTTCCTGAAGCTCTCGAACGAGCGCTGGTGTCGAGGGGAAAACCTGATTGCCAGCATGATCCTGGTGGCGGGTGTTTTTGTGATGATCATCGGTTTAATCATGATGGCGCTCTTCCCTCAGGACTGTTCACACGGAGCAGAGATGTTCTACTGTAGCGCATCCAACACTTCCAGCACCGCTTCGCCCAGCAATATTCTGCAGTTCATTAACACCACACAGAACACAAGCATCGTCTGACTCTAATTAAATAATGCTTTAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040257_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(9.5=100)
A:
PF0149013=Aa_trans=FE(11.3=100)
C2:
PF0149013=Aa_trans=PD(13.3=54.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTTCTGCTATGGTGTCAG
R:
CTCTGCTCCGTGTGAACAGTC
Band lengths:
253-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]