MmuEX0043234 @ mm10
Exon Skipping
Gene
ENSMUSG00000061171 | Slc38a11
Description
solute carrier family 38, member 11 [Source:MGI Symbol;Acc:MGI:2443383]
Coordinates
chr2:65316430-65330392:-
Coord C1 exon
chr2:65330280-65330392
Coord A exon
chr2:65326526-65326657
Coord C2 exon
chr2:65316430-65317030
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTGATCTGCTTCTTTGCCAGGTA
3' ss Score
9.23
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAGACTTGTTTGAAAATTACTGCAGAAGTGATGACCTGGTGACCTTTGGGAGGTTTTGTTATGGTATCACTGTCATTTTGACTTACCCGATTGAATGCTTTGTGACCAGAGAG
Seq A exon
GTAATTGCCAATGTGTTTTTTGGTGGGACTCTTTCATCAGTGTTCCACACCGTCTTAGCAGTGCTTATCGTTACTGCAGCCACACTGGTATCATTGATGATTGAGTGCCTTGGAATAGTTTTAGAACTCAAT
Seq C2 exon
GGTGTGCTCTGCGCGGCTCCTTTGATTTTTATCATCCCCTCAGCTTGCTATCTGAAATTATCCGAAGAACCAAGGACACATTCCGATAAGATAATGGCCTGTGTCATGTTTCCCGTCGGGGCGGTGGTGATGGTGGTAGGCTTCGTCATGGCTATCACAAATCCTCAGGACTGCACCCACGGGCAGGAAATGTTCTACTGCTTTCCTGAAAATGTCTCCTTCACAAACACCTCCTGGTCTCATCTTCAACTGACAACATAACTTTCAATTCGGAACCTCGGCATCTTTCAGCGAGCTGGCTGCTTTAAACAACATGCACCTGTGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTTTATGCCAATATGGAAAAAATTTTTAAAAAGTTGAATATATATTTTATCTTAAACTAGGGCAGATATCTTATTGTGACTGTCCTAATCTAATTAAGAAGGACCAGTGAAGGCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061171-'16-20,'16-16,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(10.8=100)
A:
PF0149013=Aa_trans=FE(11.1=100),PF141451=YrhK=PU(34.5=68.2)
C2:
PF0149013=Aa_trans=PD(15.4=60.2),PF141451=YrhK=PD(64.4=63.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACCTGGTGACCTTTGGGA
R:
TGTGATAGCCATGACGAAGCC
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types