HsaEX6016330 @ hg19
Exon Skipping
Gene
ENSG00000169507 | SLC38A11
Description
solute carrier family 38, member 11 [Source:HGNC Symbol;Acc:26836]
Coordinates
chr2:165752696-165768258:-
Coord C1 exon
chr2:165768146-165768258
Coord A exon
chr2:165765150-165765281
Coord C2 exon
chr2:165752696-165755240
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATAATCTGTTTATTCGGCAGGTA
3' ss Score
8.03
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GGGACTTATTTGAAAATTACTGCAGAAATGATGACCTGGTAACATTTGGAAGATTTTGTTATGGTGTCACTGTCATTTTGACATACCCTATGGAATGCTTTGTGACAAGAGAG
Seq A exon
GTAATTGCCAATGTGTTTTTTGGTGGGAATCTTTCATCGGTTTTCCACATTGTTGTAACAGTGATGGTCATCACTGTAGCCACGCTTGTGTCATTGCTGATTGATTGCCTCGGGATAGTTCTAGAACTCAAT
Seq C2 exon
GGTGTGCTCTGTGCAACTCCCCTCATTTTTATCATTCCATCAGCCTGTTATCTGAAACTGTCTGAAGAACCAAGGACACACTCCGATAAGATTATGTCTTGTGTCATGCTTCCCATTGGTGCTGTGGTGATGGTTTTTGGATTCGTCATGGCTATTACAAATACTCAAGACTGCACCCATGGGCAGGAAATGTTCTACTGCTTTCCTGACAATTTCTCTCTCACAAATACCTCAGAGTCTCATGTTCAGCAGACAACACAACTTTCTACTTTAAATATTAGTATCTTTCAATGAGTTGACTGCTTTAAAAATATGTATGTTTTCATAGACTTTAAAACACATAACATTTACGCTTGCTTTAGTCTGTATTTATGTTATATAAAATTATTATTTTGGCTTTTATCAAGACTTGGCTTTTATGAGTAGTGCAATATAAAAGATAAAGAAAAGAAAAATTGAATGTATTTCACCTTTAACTGGAACAAAATAAGGGTTTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169507-'14-19,'14-17,16-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(10.8=100)
A:
PF0149013=Aa_trans=FE(12.6=100)
C2:
PF0149013=Aa_trans=PD(15.8=55.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGAAATGATGACCTGGT
R:
GCCATGACGAATCCAAAAACCA
Band lengths:
247-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)