Special

MmuEX0043234 @ mm9

Exon Skipping

Gene
ENSMUSG00000061171 | Slc38a11
Description
solute carrier family 38, member 11 [Source:MGI Symbol;Acc:MGI:2443383]
Coordinates
chr2:65154487-65168449:-
Coord C1 exon
chr2:65168337-65168449
Coord A exon
chr2:65164583-65164714
Coord C2 exon
chr2:65154487-65155087
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTGATCTGCTTCTTTGCCAGGTA
3' ss Score
9.23
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAGACTTGTTTGAAAATTACTGCAGAAGTGATGACCTGGTGACCTTTGGGAGGTTTTGTTATGGTATCACTGTCATTTTGACTTACCCGATTGAATGCTTTGTGACCAGAGAG
Seq A exon
GTAATTGCCAATGTGTTTTTTGGTGGGACTCTTTCATCAGTGTTCCACACCGTCTTAGCAGTGCTTATCGTTACTGCAGCCACACTGGTATCATTGATGATTGAGTGCCTTGGAATAGTTTTAGAACTCAAT
Seq C2 exon
GGTGTGCTCTGCGCGGCTCCTTTGATTTTTATCATCCCCTCAGCTTGCTATCTGAAATTATCCGAAGAACCAAGGACACATTCCGATAAGATAATGGCCTGTGTCATGTTTCCCGTCGGGGCGGTGGTGATGGTGGTAGGCTTCGTCATGGCTATCACAAATCCTCAGGACTGCACCCACGGGCAGGAAATGTTCTACTGCTTTCCTGAAAATGTCTCCTTCACAAACACCTCCTGGTCTCATCTTCAACTGACAACATAACTTTCAATTCGGAACCTCGGCATCTTTCAGCGAGCTGGCTGCTTTAAACAACATGCACCTGTGGTTGTCTCTTTGTCACAAGATTAGCACTGATGAGCATGGAGACTTGCTTGTCCTTAGTCTTTATGCCAATATGGAAAAAATTTTTAAAAAGTTGAATATATATTTTATCTTAAACTAGGGCAGATATCTTATTGTGACTGTCCTAATCTAATTAAGAAGGACCAGTGAAGGCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061171-'15-15,'15-12,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0149013=Aa_trans=FE(13.0=100)

							
A:
PF0149013=Aa_trans=FE(15.1=100),PF141451=YrhK=PU(34.5=68.2)

							
C2:
PF0149013=Aa_trans=PD(15.4=60.2),PF141451=YrhK=PD(64.4=63.6)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000108039





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000108037, ENSMUSP00000108038, ENSMUSP00000120185, ENSMUSP00000120737, ENSMUSP00000121205
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr2:164908640-164908771 
HIGH PSI
HsaEX6016330
(SLC38A11)
Human
(hg19)
chr2:165765150-165765281 
HIGH PSI
HsaEX6016330
(SLC38A11)
Rat
(rn6)
chr3:51382024-51382155 
RnoEX6017113
(Slc38a11)
Cow
(bosTau6)
chr2:31437282-31437413 
HIGH PSI
BtaEX6009428
(SLC38A11)
Chicken
(galGal4)
chr7:19519774-19519905 
ALTERNATIVE
GgaEX0016578
(SLC38A11)
Chicken
(galGal3)
chr7:21498465-21498596 
ALTERNATIVE
GgaEX0016578
(SLC38A11)
Zebrafish
(danRer10)
chr9:50333754-50333888 
HIGH PSI
DreEX0072768
(slc38a11)
Fruitfly
(dm6)
chr2R:9047658-9047849 
HIGH PSI
DmeEX6009297
(CG13743)




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ATGACCTGGTGACCTTTGGGA

				
R: 
TGTGATAGCCATGACGAAGCC

				
Band lengths: 
242-374

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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