RnoINT0155646 @ rn6
Intron Retention
Gene
ENSRNOG00000022598 | Trerf1
Description
transcriptional regulating factor 1 [Source:RGD Symbol;Acc:1307167]
Coordinates
chr9:15684955-15687144:-
Coord C1 exon
chr9:15687041-15687144
Coord A exon
chr9:15685031-15687040
Coord C2 exon
chr9:15684955-15685030
Length
2010 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TTTTCTCTCTGACCCCACAGGCT
3' ss Score
11.47
Exon sequences
Seq C1 exon
TGGAGAACCTTCTGAATTTGTGTTGTTCCAGCGCGCTGCCAGGTGGAGGGACCAATTCGGAATTTGCTTTGCACTCTCTCTTTGAGGCCAAAGGTGACGTGATG
Seq A exon
GTAAGGAAGCTAAGGCTTCGTGGATGCATTAGCTCAGTGAGTGGGTCCAGACCAGAAGGCCTCCAGCAAAGAAAGCTCCACTTAGACTCCTGCTGGCATATCTGTAACTAAATTATCATGAGGGGTGCATGTGTTCTAGGAAATGAGAATTTCTCTTCATGTACCATGAGGTGGAAGAAACGCTTGAATGAAACATGAACTGGCCTCAAGGTTCTTCCTGCTGTGGAGAGCAGCCAAACTTGGATGCCTCCAGACCTCCTTTCTCTAGCTCATTAAGTGCTTCTACGTTCCCATCTTTAAACCTAGTTCTAAACACTGGGGACCTTCCTTAGGGACACTCAGATGGCCCTAAACTAGAACCATGGGGCCATTTTCCCAGAGTCAAAGCTGACCATTTGTCTAGTCAACCTTTACTTCTGGCCAAATAAGTCCATCACTAGCTTCAGTTTCCCTTCTATACGAGGACTTAGTTCTCCCCAGTACTTGAATCAGGGACCTGCTTTTAGGTTAACAAATAAACAAATGTGCAATATTTCACGTGTGGTCTAGTGCTTGCCTTTAGAGACCACTGCCCTTCTAGAACCTTCAGCCACATACATAAGTCACTGTGGAGTGTTCCTAAGGCATTTCTGACGATCCAGCTGATGGTGGTGGGGCCCAGCGTTCTGGGTTTTCTTCTTTTCTTTATTTCTATTTTAGGTGTATAAATGTGAATTGTGTGAAGCATCTGTGGAGGCCAGAAGAGGGCATCAGATGCCCTGGAGCTGGAGGGACAGGCTTGTCAGCCACCTTATGGTGCTGGGCATTGAACCTGAGTCCTCTGCAAGAGCAGCCAATACTTTAACCACTGAGCCAGCTCTCTAGCTCAGAGGTTCTGGGTTTCTAAGCAGTTCCTAAAAGTTGCTGAGGCTTCAGACTCTTAGACGTGGAAATAGCAAGATTTCTCTGCCTTGCTCGACCCAAACCCATCCACTCTCCTACTATCTTTGGTTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTTTGTTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGGTTTTTTGGTTTTTTTTTTTTTTCGGAGCTGGGGACCAAACCCAGGGCCTTGCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACTATCTTTGTTTTTAAGCTAGAGGGGAGCTCTTCCAGAGGATCCAGGTTTGATTCCCAGCACCCATGCGGCAGTTTAAAACTGGCTTTAACTCCAGTTCCAAGAGATCCAATGCTCTCTTCTAGGCTCCATGAGCACTCATGACACACAGACATGCACACAGACGCACATTTAGTGCAGTGAGCTTGTATTCACAGTGCTGGGAGGCAAACACAGTCAAATCCTTGGGTCTCATTGGCCAGACGGCCTCATCTGCTTGGTGACCTCTAGGCCAGTGGGAGATACTCTCTCAAAGCACAAGGTGAACAGCACTTGAAGAATGAATGGCAGCTTGTCATCTGTCCTCCGCATGCCCACACAGTTTCACATGCACGTGCATATACATACATGTACTCACATGAACACGGGCATATACACAAGACACTCTGGAAGGGTGACATGTGGTGCACTTCTTACGTAATACAGCTGTTTTTATTCAGTGGTGAAGAGAGCTGTGATTGTCTAGGAAGCAGTCACTGACCTCCCACTCCTTCCTCTCAAACCTTTCCCCTGAGAAACCGCCTCCCTTCAGAGAGACCTGGCTCTGTCTCTCCGAAGGAGTACTCAATTCATAGCTGCCACTTATGTTCTCTGTGGTGTTGACCCTTTAGCTTCAGGCATGAGCTTGGGGCCGGGAGTAGGAGGTGGGAGTTAAAACGTTGAGTCCTGTTGGAACCGAACTGAAAGGAACTTCCCGTTAGCGTCTTCTGTCCCCGGGTTTCTTCCCTCCTCTGCTGCAGTGCCAGACCTGCTTTCCTGTGGGACTCTCTCACAGACTGACTTCTGCCTTTTCTCTCTGACCCCACAG
Seq C2 exon
GCTACCCTGGAAACGCTGCTGCTGCGGAAGCCAGTCAGGTTAAAATGTCATCCTTTAGCAAACTACCACTACGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022598:ENSRNOT00000035907:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(19.3=31.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]