Difference between revisions of "Samples"
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| − | + | <div class="landing"> | |
| − | {{# | + | <h4>Available genomes</h4> |
| + | <div class="landing-header"><ul>{{#BioDB:assemblies_landing}}{{#BioDB_table_template:Template:GenomeLandingList}}{{#BioDB_clear:}}</ul></div> | ||
| + | <div class="landing-body">{{#BioDB:assemblies_landing}}{{#BioDB_table_template:Template:SampleLanding_List}}{{#BioDB_clear:}}</div> | ||
| + | </div> | ||
Latest revision as of 13:47, 21 December 2020
Available genomes
- Human (hg38)
- Human (hg19)
- Mouse (mm10)
- Mouse (mm9)
- Rat (rn6)
- Cow (bosTau6)
- Chicken (galGal4)
- Chicken (galGal3)
- Zebrafish (danRer10)
- Fruitfly (dm6)
| Sample | Group | Subgroup | Assembly |
|---|---|---|---|
| Oocyte_a_A | Early Development | Oocyte | hg38 |
| Zygote_a_A | Early Development | Zygote | hg38 |
| Embr_2C_a_A | Early Development | Embryo (2-cell) | hg38 |
| Embr_2C_a_B | Early Development | Embryo (2-cell) | hg38 |
| Embr_4C_a_A | Early Development | Embryo (4-cell) | hg38 |
| Embr_4C_a_B | Early Development | Embryo (4-cell) | hg38 |
| Embr_4C_a_C | Early Development | Embryo (4-cell) | hg38 |
| Embr_8C_a_A | Early Development | Embryo (8-cell) | hg38 |
| Embr_8C_a_B | Early Development | Embryo (8-cell) | hg38 |
| Embr_8C_a_C | Early Development | Embryo (8-cell) | hg38 |
| Embr_8C_a_D | Early Development | Embryo (8-cell) | hg38 |
| Embr_Morula_a_A | Early Development | Embryo (morula) | hg38 |
| Embr_Morula_a_B | Early Development | Embryo (morula) | hg38 |
| Embr_ICM_a_A | ESC | Embryo (ICM) | hg38 |
| ESC_H1_a | ESC | ESC (H1) | hg38 |
| ESC_H1_b | ESC | ESC (H1) | hg38 |
| ESC_H1_c | ESC | ESC (H1) | hg38 |
| ESC_H1_d | ESC | ESC (H1) | hg38 |
| ESC_H9_a | ESC | ESC (H9) | hg38 |
| ESC_H9_b | ESC | ESC (H9) | hg38 |
| iPS_a | iPS | iPS cells | hg38 |
| iPS_b | iPS | iPS cells | hg38 |
| Embr_TE_a_A | Placental | Embryo (TE) | hg38 |
| Embr_TE_a_B | Placental | Embryo (TE) | hg38 |
| HFDPC | Precursors | HFDPC | hg38 |
| MSC | Precursors | Mesenchymal SCs | hg38 |
| NCC_Cranial_c | Neural_crest | Neural crest cells | hg38 |
| NCC_default_b | Neural_crest | Neural crest cells | hg38 |
| NCC_Enteric_b | Neural_crest | Neural crest cells | hg38 |
| NCC_Melano_biased_b | Neural_crest | Neural crest cells | hg38 |
| NPC_a | NPC | NPC | hg38 |
| NPC_b | NPC | NPC | hg38 |
| Embr_Forebrain_St13_14 | Embryonic Brain | Forebrain (St13-14) | hg38 |
| Embr_Forebrain_St17_20 | Embryonic Brain | Forebrain (St17-20) | hg38 |
| Embr_Forebrain_St22_23 | Embryonic Brain | Forebrain (St22-23) | hg38 |
| Embr_Forebrain_9_12wpc | Embryonic Brain | Forebrain (9-12 wpc) | hg38 |
| Embr_Cortex_13_17wpc | Embryonic Brain | Cortex (13-17 wpc) | hg38 |
| Whole_Brain_b | Neural | Whole Brain | hg38 |
| Cortex | Neural | Cortex | hg38 |
| Frontal_Gyrus_young | Neural | Frontal Gyrus (young) | hg38 |
| Frontal_Gyrus_old | Neural | Frontal Gyrus (old) | hg38 |
| Sup_Temporal_Gyrus | Neural | Sup Temporal Gyrus | hg38 |
| Cerebellum_a | Neural | Cerebellum | hg38 |
| Cerebellum_c | Neural | Cerebellum | hg38 |
| Neurons | Neural | Neurons | hg38 |
| Neurons_Cortex_KCl_0h | Neural | Neurons (KCl, 0h) | hg38 |
| Neurons_Cortex_KCl_1h | Neural | Neurons (KCl, 1h) | hg38 |
| Neurons_Cortex_KCl_6h | Neural | Neurons (KCl, 6h) | hg38 |
| Retina_a | Neural | Retina | hg38 |
| Retina_macular | Neural | Retina | hg38 |
| Retina_peripheral | Neural | Retina | hg38 |
| Astrocytes | Glia | Astrocytes | hg38 |
| Microglia | Glia | Microglia | hg38 |
| Oligodendrocytes | Glia | Oligodendrocytes | hg38 |
| Pancreas_Alpha_Old | Tissues | Pancreas (Alpha cells) | hg38 |
| Pancreas_Alpha_Young | Tissues | Pancreas (Alpha cells) | hg38 |
| Pancreas_Beta_Old | Tissues | Pancreas (Beta cells) | hg38 |
| Pancreas_Beta_Young | Tissues | Pancreas (Beta cells) | hg38 |
| Pancreas_Acinar_Old | Tissues | Pancreas (Acinar) | hg38 |
| Pancreas_Acinar_Young | Tissues | Pancreas (Acinar) | hg38 |
| Pancreas_Duct_Old | Tissues | Pancreas (Duct) | hg38 |
| Pancreas_Duct_Young | Tissues | Pancreas (Duct) | hg38 |
| Heart_a | Muscle | Heart | hg38 |
| Heart_b | Muscle | Heart | hg38 |
| Heart_c | Muscle | Heart | hg38 |
| Muscle_b | Muscle | Muscle | hg38 |
| Muscle_d | Muscle | Muscle | hg38 |
| Muscle_e | Muscle | Muscle | hg38 |
| Testis_a | Testis | Testis | hg38 |
| Testis_b | Testis | Testis | hg38 |
| Testis_c | Testis | Testis | hg38 |
| Ovary_a | Ovary | Ovary | hg38 |
| Ovary_b | Ovary | Ovary | hg38 |
| Placenta_a | Placental | Placenta | hg38 |
| Placenta_b | Placental | Placenta | hg38 |
| Placenta_c | Placental | Placenta | hg38 |
| Decidua | Placental | Decidua | hg38 |
| Amnion | Placental | Amnion | hg38 |
| Chorion | Placental | Chorion | hg38 |
| Skin_a | Epithelial | Skin | hg38 |
| Skin_b | Epithelial | Skin | hg38 |
| Skin_c | Epithelial | Skin | hg38 |
| Skin_d | Epithelial | Skin | hg38 |
| Placenta_Epith | Epithelial | Placental Epithelium | hg38 |
| EpithelialCells | Epithelial | Epithelial Cells | hg38 |
| Breast_Epith_a | Epithelial | Breast Epithelium | hg38 |
| HMEpC_a | Epithelial | Breast Epithelium | hg38 |
| Stomach_a | Digestive Tract | Stomach | hg38 |
| Stomach_b | Digestive Tract | Stomach | hg38 |
| Small_intestine | Digestive Tract | Small intestine | hg38 |
| Colon_b | Digestive Tract | Colon | hg38 |
| Colon_sigmoid | Digestive Tract | Colon | hg38 |
| Colon_transverse | Digestive Tract | Colon | hg38 |
| Liver_a | Tissues | Liver | hg38 |
| Liver_b | Tissues | Liver | hg38 |
| Liver_c | Tissues | Liver | hg38 |
| Kidney_d | Tissues | Kidney | hg38 |
| Kidney_e | Tissues | Kidney | hg38 |
| Kidney_f | Tissues | Kidney | hg38 |
| Lung_b | Tissues | Lung | hg38 |
| Lung_e | Tissues | Lung | hg38 |
| Lung_f | Tissues | Lung | hg38 |
| EndomStromCells | Tissues | Endometrium | hg38 |
| Adipose_b | Tissues | Adipose | hg38 |
| Adipose_c | Tissues | Adipose | hg38 |
| Adipose_d | Tissues | Adipose | hg38 |
| Breast_a | Tissues | Breast | hg38 |
| Adrenal_b | Tissues | Adrenal | hg38 |
| Adrenal_c | Tissues | Adrenal | hg38 |
| Prostate_b | Tissues | Prostate | hg38 |
| Prostate_c | Tissues | Prostate | hg38 |
| Prostate_d | Tissues | Prostate | hg38 |
| Thyroid_b | Tissues | Thyroid | hg38 |
| Thyroid_c | Tissues | Thyroid | hg38 |
| Thyroid_d | Tissues | Thyroid | hg38 |
| Bladder_a | Tissues | Bladder | hg38 |
| EndothCells | Tissues | Endothelium | hg38 |
| Brain_Endoth | Tissues | Endothelium | hg38 |
| Melanocytes | Tissues | Melanocytes | hg38 |
| Fibroblasts | Cells | Fibroblasts | hg38 |
| GLS_cells | Cells | Various primary cells | hg38 |
| Bone_marrow_a | Immune-Hematopoietic | Bone Marrow | hg38 |
| Bone_marrow_b | Immune-Hematopoietic | Bone Marrow | hg38 |
| Bone_marrow_c | Immune-Hematopoietic | Bone Marrow | hg38 |
| Spleen_a | Immune-Hematopoietic | Spleen | hg38 |
| Spleen_b | Immune-Hematopoietic | Spleen | hg38 |
| Thymus_a | Immune-Hematopoietic | Thymus | hg38 |
| Thymus_b | Immune-Hematopoietic | Thymus | hg38 |
| Lymph_node_b | Immune-Hematopoietic | Lymph Node | hg38 |
| Lymph_node_c | Immune-Hematopoietic | Lymph Node | hg38 |
| MonoNucCells | Immune-Hematopoietic | White Blood cells | hg38 |
| WBC_d | Immune-Hematopoietic | White Blood cells | hg38 |
| WBC_e | Immune-Hematopoietic | White Blood cells | hg38 |
| CL_MB231 | Cell Lines | MB231 | hg38 |
| CL_PNT2 | Cell Lines | PNT2 | hg38 |
| CL_Gm12878 | Cell Lines | Gm12878 | hg38 |
| CL_K562 | Cell Lines | K562 | hg38 |
| CL_SHSY5Y_noRA | Cell Lines | SHSY5Y (no RA) | hg38 |
| CL_SHSY5Y_RA | Cell Lines | SHSY5Y (with RA) | hg38 |
| Neuroblastoma | Cell Lines | Neuroblastoma | hg38 |
| CL_EndoBH1C_a | Cell Lines | EndoBH1C | hg38 |
| CL_HeLa | Cell Lines | HeLa | hg38 |
| CL_293T | Cell Lines | 293T | hg38 |
| CL_MCF7 | Cell Lines | MCF7 | hg38 |
| CL_LP1 | Cell Lines | LP1 | hg38 |
| Sample | Group | Subgroup | Assembly |
|---|---|---|---|
| ESC_H1_a | ESC | ESC (H1) | hg19 |
| ESC_H1_b | ESC | ESC (H1) | hg19 |
| ESC_H1_c | ESC | ESC (H1) | hg19 |
| ESC_H1_d | ESC | ESC (H1) | hg19 |
| ESC_H9_a | ESC | ESC (H9) | hg19 |
| ESC_H9_b | ESC | ESC (H9) | hg19 |
| iPS_a | iPS | iPS cells | hg19 |
| iPS_b | iPS | iPS cells | hg19 |
| HFDPC | Precursors | HFDPC | hg19 |
| MSC | Precursors | Mesenchymal SCs | hg19 |
| NPC_a | NPC | NPC | hg19 |
| NPC_b | NPC | NPC | hg19 |
| Embr_Forebrain_St13_14 | Embryonic Brain | Forebrain (St13-14) | hg19 |
| Embr_Forebrain_St17_20 | Embryonic Brain | Forebrain (St17-20) | hg19 |
| Embr_Forebrain_St22_23 | Embryonic Brain | Forebrain (St22-23) | hg19 |
| Embr_Forebrain_9_12wpc | Embryonic Brain | Forebrain (13-17wpc) | hg19 |
| Embr_Cortex_13_17wpc | Embryonic Brain | Cortex (13-17wpc) | hg19 |
| Whole_Brain_b | Neural | Whole Brain | hg19 |
| Cortex | Neural | Cortex | hg19 |
| Frontal_Gyrus_young | Neural | Frontal Gyrus (young) | hg19 |
| Frontal_Gyrus_old | Neural | Frontal Gyrus (old) | hg19 |
| Sup_Temporal_Gyrus | Neural | Sup Temporal Gyrus | hg19 |
| Cerebellum_a | Neural | Cerebellum | hg19 |
| Cerebellum_c | Neural | Cerebellum | hg19 |
| Neurons | Neural | Neurons | hg19 |
| Retina_a | Neural | Retina | hg19 |
| Retina_macular | Neural | Retina | hg19 |
| Retina_peripheral | Neural | Retina | hg19 |
| Astrocytes | Glia | Astrocytes | hg19 |
| Microglia | Glia | Microglia | hg19 |
| Oligodendrocytes | Glia | Oligodentdrocytes | hg19 |
| Heart_a | Muscle | Heart | hg19 |
| Heart_b | Muscle | Heart | hg19 |
| Heart_c | Muscle | Heart | hg19 |
| Muscle_b | Muscle | Muscle | hg19 |
| Muscle_d | Muscle | Muscle | hg19 |
| Muscle_e | Muscle | Muscle | hg19 |
| Testis_a | Testis | Testis | hg19 |
| Testis_b | Testis | Testis | hg19 |
| Testis_c | Testis | Testis | hg19 |
| Ovary_a | Ovary | Ovary | hg19 |
| Ovary_b | Ovary | Ovary | hg19 |
| Placenta_a | Placental | Placenta | hg19 |
| Placenta_b | Placental | Placenta | hg19 |
| Placenta_c | Placental | Placenta | hg19 |
| Decidua | Placental | Decidua | hg19 |
| Amnion | Placental | Amnion | hg19 |
| Chorion | Placental | Chorion | hg19 |
| Skin | Epithelial | Skin | hg19 |
| Placenta_Epith | Epithelial | Placental Epithelium | hg19 |
| EpithelialCells | Epithelial | Epithelial Cells | hg19 |
| Breast_Epith_a | Epithelial | Breast Epithelium | hg19 |
| HMEpC_a | Epithelial | Breast Epithelium | hg19 |
| Stomach_a | Digestive Tract | Stomach | hg19 |
| Stomach_b | Digestive Tract | Stomach | hg19 |
| Small_intestine | Digestive Tract | Small intestine | hg19 |
| Colon_b | Digestive Tract | Colon | hg19 |
| Colon_sigmoid | Digestive Tract | Colon | hg19 |
| Colon_transverse | Digestive Tract | Colon | hg19 |
| Liver_a | Tissues | Liver | hg19 |
| Liver_b | Tissues | Liver | hg19 |
| Liver_c | Tissues | Liver | hg19 |
| Kidney_b | Tissues | Kidney | hg19 |
| Kidney_c | Tissues | Kidney | hg19 |
| Kidney_d | Tissues | Kidney | hg19 |
| Lung_b | Tissues | Lung | hg19 |
| Lung_e | Tissues | Lung | hg19 |
| Lung_f | Tissues | Lung | hg19 |
| EndomStromCells | Tissues | Endometrium | hg19 |
| Adipose_b | Tissues | Adipose | hg19 |
| Adipose_c | Tissues | Adipose | hg19 |
| Adipose_d | Tissues | Adipose | hg19 |
| Breast_a | Tissues | Breast | hg19 |
| Adrenal_b | Tissues | Adrenal | hg19 |
| Adrenal_c | Tissues | Adrenal | hg19 |
| Prostate_b | Tissues | Prostate | hg19 |
| Prostate_c | Tissues | Prostate | hg19 |
| Prostate_d | Tissues | Prostate | hg19 |
| Thyroid_b | Tissues | Thyroid | hg19 |
| Thyroid_c | Tissues | Thyroid | hg19 |
| Thyroid_d | Tissues | Thyroid | hg19 |
| Bladder_a | Tissues | Bladder | hg19 |
| EndothCells | Tissues | Endothelium | hg19 |
| Brain_Endoth | Tissues | Endothelium | hg19 |
| Melanocytes | Tissues | Melanocytes | hg19 |
| Fibroblasts | Cells | Fibroblasts | hg19 |
| GLS_cells | Cells | Various primary cells | hg19 |
| Bone_marrow_a | Immune-Hematopoietic | Bone Marrow | hg19 |
| Bone_marrow_b | Immune-Hematopoietic | Bone Marrow | hg19 |
| Bone_marrow_c | Immune-Hematopoietic | Bone Marrow | hg19 |
| Spleen_a | Immune-Hematopoietic | Spleen | hg19 |
| Spleen_b | Immune-Hematopoietic | Spleen | hg19 |
| Thymus_a | Immune-Hematopoietic | Thymus | hg19 |
| Thymus_b | Immune-Hematopoietic | Thymus | hg19 |
| Lymph_node_b | Immune-Hematopoietic | Lymph Node | hg19 |
| Lymph_node_c | Immune-Hematopoietic | Lymph Node | hg19 |
| MonoNucCells | Immune-Hematopoietic | White Blood cells | hg19 |
| WBC_MNC_b | Immune-Hematopoietic | White Blood cells | hg19 |
| WBC_MNC_c | Immune-Hematopoietic | White Blood cells | hg19 |
| CL_MB231 | Cell Lines | MB231 | hg19 |
| CL_PNT2 | Cell Lines | PNT2 | hg19 |
| CL_Gm12878 | Cell Lines | Gm12878 | hg19 |
| CL_K562 | Cell Lines | K562 | hg19 |
| Neuroblastoma | Cell Lines | Neuroblastoma | hg19 |
| CL_HeLa | Cell Lines | HeLa | hg19 |
| CL_293T | Cell Lines | 293T | hg19 |
| CL_MCF7 | Cell Lines | MCF7 | hg19 |
| CL_LP1 | Cell Lines | LP1 | hg19 |
| Sample | Group | Subgroup | Assembly |
|---|---|---|---|
| Oocyte_a | Early Development | Oocyte | mm10 |
| Oocyte_b | Early Development | Oocyte | mm10 |
| Zygote_be_A | Early Development | Zygote | mm10 |
| Zygote_c_A | Early Development | Zygote | mm10 |
| Embr_2C_a | Early Development | Embryo (2-cell) | mm10 |
| Embr_2C_b | Early Development | Embryo (2-cell) | mm10 |
| Embr_2C_c | Early Development | Embryo (2-cell) | mm10 |
| Embr_4C_a | Early Development | Embryo (4-cell) | mm10 |
| Embr_4C_b | Early Development | Embryo (4-cell) | mm10 |
| Embr_8C_a | Early Development | Embryo (8-cell) | mm10 |
| Embr_8C_b | Early Development | Embryo (8-cell) | mm10 |
| Embr_16C_c_A | Early Development | Embryo (16-cell) | mm10 |
| Embr_16C_c_B | Early Development | Embryo (16-cell) | mm10 |
| Embr_16C_c_C | Early Development | Embryo (16-cell) | mm10 |
| Embr_ICM_early_c_A | Inner Cell Mass | Embryo (ICM - early) | mm10 |
| Embr_ICM_early_c_B | Inner Cell Mass | Embryo (ICM - early) | mm10 |
| Embr_ICM_mid_c_A | Inner Cell Mass | Embryo (ICM - mid) | mm10 |
| Embr_ICM_mid_c_B | Inner Cell Mass | Embryo (ICM - mid) | mm10 |
| ESC_CGR8 | ESC | ESC | mm10 |
| ESC_D3 | ESC | ESC | mm10 |
| ESC_E14 | ESC | ESC | mm10 |
| ESC_J1 | ESC | ESC | mm10 |
| ESC_OS25_TT2 | ESC | ESC | mm10 |
| ESC_v65 | ESC | ESC | mm10 |
| iPS_a | iPS | iPS cells | mm10 |
| iPS_b | iPS | iPS cells | mm10 |
| PGC_E9_5_11_5 | PGC | PGC (E9.5-11.5) | mm10 |
| PGC_E13_5 | PGC | PGC (E13.5) | mm10 |
| Embr_Limb_E14_5 | Embryonic Tissues | Limb (E14.5) | mm10 |
| Embr_Liver_E14_5 | Embryonic Tissues | Liver (E14.5) | mm10 |
| Embr_E11_FNP | Neural Crest Cells | Neural crest (E11) | mm10 |
| Embr_E11_Md | Neural Crest Cells | Neural crest (E11) | mm10 |
| Embr_E11_Mx | Neural Crest Cells | Neural crest (E11) | mm10 |
| Embr_E11_PA2 | Neural Crest Cells | Neural crest (E11) | mm10 |
| NPC_a | NPC | NPC | mm10 |
| NPC_c | NPC | NPC | mm10 |
| NPC_d | NPC | NPC | mm10 |
| Ventricular_Zone | NPC | NPC | mm10 |
| Embr_Brain_E11_5 | Embryonic Brain | Brain (E11.5) | mm10 |
| Embr_Brain_E14_5 | Embryonic Brain | Brain (E14.5) | mm10 |
| Embr_Cortex_E17_5 | Embryonic Brain | Cortex (E17.5) | mm10 |
| Whole_Brain_a | Neural | Whole Brain | mm10 |
| Whole_Brain_b | Neural | Whole Brain | mm10 |
| Cortex_a | Neural | Cortex | mm10 |
| Cortex_b | Neural | Cortex | mm10 |
| Frontal_Lobe | Neural | Frontal Lobe | mm10 |
| Thalamus | Neural | Thalamus | mm10 |
| Hypothalamus | Neural | Hypothalamus | mm10 |
| Hippocampus | Neural | Hippocampus | mm10 |
| Cerebellum_a | Neural | Cerebellum | mm10 |
| Cerebellum_b | Neural | Cerebellum | mm10 |
| Cerebellum_c | Neural | Cerebellum | mm10 |
| Neurons_a | Neural | Neurons | mm10 |
| Neurons_b | Neural | Neurons | mm10 |
| Neurons_KCl_0h | Neural | Neurons (KCL 0h) | mm10 |
| Neurons_KCl_3h | Neural | Neurons (KCL 3h) | mm10 |
| CeliacSM_Ganglion_Snap25 | Neural | PNS ganglia | mm10 |
| DRoot_Ganglion_Snap25 | Neural | PNS ganglia | mm10 |
| Nodose_Ganglion_Snap25 | Neural | PNS ganglia | mm10 |
| Retina_a | Neural | Retina | mm10 |
| Retina_b | Neural | Retina | mm10 |
| Retina_c | Neural | Retina | mm10 |
| Rods_a | Neural | Photoreceptors | mm10 |
| Cones_a | Neural | Photoreceptors | mm10 |
| Eye_a | Tissues | Eye | mm10 |
| Eye_b | Tissues | Eye | mm10 |
| Eye_c | Tissues | Eye | mm10 |
| Astrocytes | Glia | Astrocytes | mm10 |
| Microglia | Glia | Microglia | mm10 |
| OligodPC | Glia | Oligodend PCs | mm10 |
| New_Oligod | Glia | New Oligodend | mm10 |
| Myelinated_Oligod | Glia | Myelinated Oligod | mm10 |
| Heart_a | Muscle | Heart | mm10 |
| Heart_b | Muscle | Heart | mm10 |
| Heart_c | Muscle | Heart | mm10 |
| Heart_d | Muscle | Heart | mm10 |
| Muscle_a | Muscle | Muscle | mm10 |
| Muscle_b | Muscle | Muscle | mm10 |
| Muscle_c | Muscle | Muscle | mm10 |
| Testis_a | Testis | Testis | mm10 |
| Testis_b | Testis | Testis | mm10 |
| Testis_c | Testis | Testis | mm10 |
| Ovary_a | Ovary | Ovary | mm10 |
| Ovary_b | Ovary | Ovary | mm10 |
| Embr_TE_early_c_A | Trophectoderm | Trophectoderm (early) | mm10 |
| Embr_TE_mid_c_A | Trophectoderm | Trophectoderm (early) | mm10 |
| Embr_TE_mid_c_B | Trophectoderm | Trophectoderm (early) | mm10 |
| Embr_TE_mid_c_C | Trophectoderm | Trophectoderm (early) | mm10 |
| Embr_TE_late_c_A | Trophectoderm | Trophectoderm (late) | mm10 |
| Embr_TE_late_c_B | Trophectoderm | Trophectoderm (late) | mm10 |
| Placenta_a | Placental | Placenta | mm10 |
| Placenta_c | Placental | Placenta | mm10 |
| Placenta_d | Placental | Placenta | mm10 |
| Skin_a | Epithelial | Skin | mm10 |
| Skin_b | Epithelial | Skin | mm10 |
| Skin_c | Epithelial | Skin | mm10 |
| Keratinocytes | Epithelial | Keratinocytes | mm10 |
| Epidermis_a | Epithelial | Epidermis | mm10 |
| Epidermis_b | Epithelial | Epidermis | mm10 |
| Epidermis_c | Epithelial | Epidermis | mm10 |
| Dermis_a | Dermis | Dermis | mm10 |
| Dermis_b | Dermis | Dermis | mm10 |
| Dermis_c | Dermis | Dermis | mm10 |
| Stomach_a | Digestive Tract | Stomach | mm10 |
| Stomach_b | Digestive Tract | Stomach | mm10 |
| Stomach_c | Digestive Tract | Stomach | mm10 |
| Intestine_small_a | Digestive Tract | Intestine | mm10 |
| Intestine_small_b | Digestive Tract | Intestine | mm10 |
| Colon_a | Digestive Tract | Colon | mm10 |
| Colon_b | Digestive Tract | Colon | mm10 |
| Colon_c | Digestive Tract | Colon | mm10 |
| Liver_a | Tissues | Liver | mm10 |
| Liver_b | Tissues | Liver | mm10 |
| Liver_c | Tissues | Liver | mm10 |
| Kidney_a | Tissues | Kidney | mm10 |
| Kidney_b | Tissues | Kidney | mm10 |
| Kidney_c | Tissues | Kidney | mm10 |
| Uterus | Tissues | Uterus | mm10 |
| Lung_a | Tissues | Lung | mm10 |
| Lung_c | Tissues | Lung | mm10 |
| Lung_d | Tissues | Lung | mm10 |
| FatPad_a | Tissues | Fat Pad | mm10 |
| FatPad_b | Tissues | Fat Pad | mm10 |
| White_Adipose | Tissues | Adipose (white) | mm10 |
| Brown_Adipose | Tissues | Adipose (brown) | mm10 |
| MammGland_a | Tissues | Mammary Gland | mm10 |
| MammGland_b | Tissues | Mammary Gland | mm10 |
| MammGland_c | Tissues | Mammary Gland | mm10 |
| Adrenal_a | Tissues | Adrenal | mm10 |
| Adrenal_b | Tissues | Adrenal | mm10 |
| Adrenal_c | Tissues | Adrenal | mm10 |
| Prostate_a | Tissues | Prostate | mm10 |
| Prostate_b | Tissues | Prostate | mm10 |
| Thyroid_a | Tissues | Thyroid | mm10 |
| Thyroid_b | Tissues | Thyroid | mm10 |
| Bladder_a | Tissues | Bladder | mm10 |
| Bladder_b | Tissues | Bladder | mm10 |
| Bladder_c | Tissues | Bladder | mm10 |
| Brain_Endothelium | Tissues | Brain Endothelium | mm10 |
| MEF_b | Cells | MEF | mm10 |
| MEF_a | Cells | MEF | mm10 |
| MEF_c | Cells | MEF | mm10 |
| HSC_a | HSC | Hematopoietic stem cells | mm10 |
| HSC_b | HSC | Hematopoietic stem cells | mm10 |
| HSC_c | HSC | Hematopoietic stem cells | mm10 |
| Bone_marrow | Immune-Hematopoietic | Bone Marrow | mm10 |
| Lymph_node_a | Immune-Hematopoietic | Lymph Node | mm10 |
| Lymph_node_b | Immune-Hematopoietic | Lymph Node | mm10 |
| Spleen_a | Immune-Hematopoietic | Spleen | mm10 |
| Spleen_b | Immune-Hematopoietic | Spleen | mm10 |
| Spleen_c | Immune-Hematopoietic | Spleen | mm10 |
| Thymus_a | Immune-Hematopoietic | Thymus | mm10 |
| Thymus_b | Immune-Hematopoietic | Thymus | mm10 |
| Thymus_c | Immune-Hematopoietic | Thymus | mm10 |
| Monocytes_ab | Immune-Hematopoietic | Monocytes | mm10 |
| Monocytes_c | Immune-Hematopoietic | Monocytes | mm10 |
| Erythroblasts_a | Immune-Hematopoietic | Erythroblasts | mm10 |
| Erythroblasts_b | Immune-Hematopoietic | Erythroblasts | mm10 |
| CL_C2C12_a | Cell Lines | C2C12 | mm10 |
| CL_C2C12_b | Cell Lines | C2C12 | mm10 |
| CL_CH12 | Cell Lines | CH12 | mm10 |
| CL_MEL | Cell Lines | MEL | mm10 |
| CL_3T3_a | Cell Lines | 3T3 | mm10 |
| CL_3T3_b | Cell Lines | 3T3 | mm10 |
| CL_N2A_b | Cell Lines | N2A | mm10 |
| CL_N2A_c | Cell Lines | N2A | mm10 |
| Sample | Group | Subgroup | Assembly |
|---|---|---|---|
| Oocyte_a | Early Development | Oocyte | mm9 |
| Oocyte_b | Early Development | Oocyte | mm9 |
| Embr_2C_a | Early Development | Embryo (2-cell) | mm9 |
| Embr_2C_c | Early Development | Embryo (2-cell) | mm9 |
| Embr_4C_a | Early Development | Embryo (4-cell) | mm9 |
| Embr_4C_b | Early Development | Embryo (4-cell) | mm9 |
| Embr_8C_a | Early Development | Embryo (8-cell) | mm9 |
| Embr_8C_b | Early Development | Embryo (8-cell) | mm9 |
| ESC_CGR8 | ESC | ESC | mm9 |
| ESC_D3 | ESC | ESC | mm9 |
| ESC_E14 | ESC | ESC | mm9 |
| ESC_J1 | ESC | ESC | mm9 |
| ESC_OS25_TT2 | ESC | ESC | mm9 |
| ESC_v65 | ESC | ESC | mm9 |
| iPS_a | iPS | iPS cells | mm9 |
| iPS_b | iPS | iPS cells | mm9 |
| PGC_E9_5_11_5 | PGC | PGC (E9.5-11.5) | mm9 |
| PGC_E13_5 | PGC | PGC (E13.5) | mm9 |
| Embr_Limb_E14_5 | Embryonic Tissues | Limb (E14.5) | mm9 |
| Embr_Liver_E14_5 | Embryonic Tissues | Liver (E14.5) | mm9 |
| NPC_a | NPC | NPC | mm9 |
| NPC_c | NPC | NPC | mm9 |
| NPC_d | NPC | NPC | mm9 |
| Ventricular_Zone | NPC | NPC | mm9 |
| Embr_Brain_E11_5 | Embryonic Brain | Brain (E11.5) | mm9 |
| Embr_Brain_E14_5 | Embryonic Brain | Brain (E14.5) | mm9 |
| Embr_Cortex_E17_5 | Embryonic Brain | Cortex (E17.5) | mm9 |
| Whole_Brain_a | Neural | Whole Brain | mm9 |
| Whole_Brain_b | Neural | Whole Brain | mm9 |
| Cortex_a | Neural | Cortex | mm9 |
| Cortex_b | Neural | Cortex | mm9 |
| Frontal_Lobe | Neural | Frontal Lobe | mm9 |
| Thalamus | Neural | Thalamus | mm9 |
| Hypothalamus | Neural | Hypothalamus | mm9 |
| Hippocampus | Neural | Hippocampus | mm9 |
| Cerebellum_a | Neural | Cerebellum | mm9 |
| Cerebellum_b | Neural | Cerebellum | mm9 |
| Cerebellum_c | Neural | Cerebellum | mm9 |
| Neurons_a | Neural | Neurons | mm9 |
| Neurons_b | Neural | Neurons | mm9 |
| Neurons_KCl_0h | Neural | Neurons (KCL 0h) | mm9 |
| Neurons_KCl_3h | Neural | Neurons (KCL 3h) | mm9 |
| Retina_a | Neural | Retina | mm9 |
| Retina_b | Neural | Retina | mm9 |
| Retina_c | Neural | Retina | mm9 |
| Eye_a | Tissues | Eye | mm9 |
| Eye_b | Tissues | Eye | mm9 |
| Eye_c | Tissues | Eye | mm9 |
| Astrocytes | Glia | Astrocytes | mm9 |
| Microglia | Glia | Microglia | mm9 |
| OligodPC | Glia | Oligodend PCs | mm9 |
| New_Oligod | Glia | New Oligodend | mm9 |
| Myelinated_Oligod | Glia | Myelinated Oligod | mm9 |
| Myoblast_0h | Myoblast Diff | Myoblast (0h) | mm9 |
| Myoblast_60h | Myoblast Diff | Myoblast (60h) | mm9 |
| Myoblast_120h | Myoblast Diff | Myoblast (120h) | mm9 |
| Myoblast_168h | Myoblast Diff | Myoblast (168h) | mm9 |
| Heart_a | Muscle | Heart | mm9 |
| Heart_b | Muscle | Heart | mm9 |
| Heart_c | Muscle | Heart | mm9 |
| Heart_d | Muscle | Heart | mm9 |
| Muscle_a | Muscle | Muscle | mm9 |
| Muscle_b | Muscle | Muscle | mm9 |
| Muscle_c | Muscle | Muscle | mm9 |
| Testis_a | Testis | Testis | mm9 |
| Testis_b | Testis | Testis | mm9 |
| Testis_c | Testis | Testis | mm9 |
| Spermatogonia | Spermatogenesis | Spermatogonia | mm9 |
| Spermatocytes | Spermatogenesis | Spermatocytes | mm9 |
| Spermatids | Spermatogenesis | Spermatids | mm9 |
| Spermatozoa | Spermatogenesis | Spermatozoa | mm9 |
| Sertoli_cells | Spermatogenesis | Sertoli cells | mm9 |
| Ovary_a | Ovary | Ovary | mm9 |
| Ovary_b | Ovary | Ovary | mm9 |
| Placenta_a | Placental | Placenta | mm9 |
| Placenta_c | Placental | Placenta | mm9 |
| Placenta_d | Placental | Placenta | mm9 |
| Skin_a | Epithelial | Skin | mm9 |
| Skin_b | Epithelial | Skin | mm9 |
| Skin_c | Epithelial | Skin | mm9 |
| Keratinocytes | Epithelial | Keratinocytes | mm9 |
| Uterus | Tissues | Uterus | mm9 |
| Stomach_a | Digestive Tract | Stomach | mm9 |
| Stomach_b | Digestive Tract | Stomach | mm9 |
| Stomach_c | Digestive Tract | Stomach | mm9 |
| Intestine_small_a | Digestive Tract | Intestine | mm9 |
| Intestine_small_b | Digestive Tract | Intestine | mm9 |
| Colon_a | Digestive Tract | Colon | mm9 |
| Colon_b | Digestive Tract | Colon | mm9 |
| Colon_c | Digestive Tract | Colon | mm9 |
| Liver_a | Tissues | Liver | mm9 |
| Liver_b | Tissues | Liver | mm9 |
| Liver_c | Tissues | Liver | mm9 |
| Kidney_a | Tissues | Kidney | mm9 |
| Kidney_b | Tissues | Kidney | mm9 |
| Kidney_c | Tissues | Kidney | mm9 |
| Lung_a | Tissues | Lung | mm9 |
| Lung_c | Tissues | Lung | mm9 |
| Lung_d | Tissues | Lung | mm9 |
| FatPad_a | Tissues | Fat Pad | mm9 |
| FatPad_b | Tissues | Fat Pad | mm9 |
| White_Adipose | Tissues | Adipose (white) | mm9 |
| Brown_Adipose | Tissues | Adipose (brown) | mm9 |
| MammGland_a | Tissues | Mammary Gland | mm9 |
| MammGland_b | Tissues | Mammary Gland | mm9 |
| MammGland_c | Tissues | Mammary Gland | mm9 |
| Adrenal_a | Tissues | Adrenal | mm9 |
| Adrenal_b | Tissues | Adrenal | mm9 |
| Adrenal_c | Tissues | Adrenal | mm9 |
| Prostate_a | Tissues | Prostate | mm9 |
| Prostate_b | Tissues | Prostate | mm9 |
| Thyroid_a | Tissues | Thyroid | mm9 |
| Thyroid_b | Tissues | Thyroid | mm9 |
| Bladder_a | Tissues | Bladder | mm9 |
| Bladder_b | Tissues | Bladder | mm9 |
| Bladder_c | Tissues | Bladder | mm9 |
| Brain_Endothelium | Tissues | Brain Endothelium | mm9 |
| Pancreas_NewBorn | Tissues | Pancreas | mm9 |
| Pancreas_9weeks | Tissues | Pancreas | mm9 |
| MEF_b | Cells | MEF | mm9 |
| MEF_a | Cells | MEF | mm9 |
| MEF_c | Cells | MEF | mm9 |
| Bone_marrow | Immune-Hematopoietic | Bone Marrow | mm9 |
| Lymph_node_a | Immune-Hematopoietic | Lymph Node | mm9 |
| Lymph_node_b | Immune-Hematopoietic | Lymph Node | mm9 |
| Spleen_a | Immune-Hematopoietic | Spleen | mm9 |
| Spleen_b | Immune-Hematopoietic | Spleen | mm9 |
| Spleen_c | Immune-Hematopoietic | Spleen | mm9 |
| Thymus_a | Immune-Hematopoietic | Thymus | mm9 |
| Thymus_b | Immune-Hematopoietic | Thymus | mm9 |
| Thymus_c | Immune-Hematopoietic | Thymus | mm9 |
| CL_C2C12_a | Cell Lines | C2C12 | mm9 |
| CL_C2C12_b | Cell Lines | C2C12 | mm9 |
| CL_CH12 | Cell Lines | CH12 | mm9 |
| CL_MEL | Cell Lines | MEL | mm9 |
| CL_3T3_a | Cell Lines | 3T3 | mm9 |
| CL_3T3_b | Cell Lines | 3T3 | mm9 |
| CL_N2A_b | Cell Lines | N2A | mm9 |
| CL_N2A_c | Cell Lines | N2A | mm9 |
| Sample | Group | Subgroup | Assembly |
|---|---|---|---|
| ESC_a | ESC | ESC | rn6 |
| ESC_b | ESC | ESC | rn6 |
| EpiSC | EpiSC | EpiSC | rn6 |
| Front_Cortex_E20 | Embryonic Brain | Cortex (E20.5) | rn6 |
| Whole_brain_ab | Neural | Whole Brain | rn6 |
| Whole_brain_c | Neural | Whole Brain | rn6 |
| Whole_brain_Fem | Neural | Whole Brain | rn6 |
| Whole_brain_Male | Neural | Whole Brain | rn6 |
| Whole_brain_old | Neural | Whole Brain | rn6 |
| Cortex_ab | Neural | Cortex | rn6 |
| Cortex_MPFr | Neural | Cortex | rn6 |
| Cortex_PreFront | Neural | Cortex | rn6 |
| Dentate_gyrus_a | Neural | Dentate Gyrus | rn6 |
| Hippocampus_a | Neural | Hippocampus | rn6 |
| Hippocampus_b | Neural | Hippocampus | rn6 |
| Hippocampus_c | Neural | Hippocampus | rn6 |
| Hypothalamus_ab | Neural | Hypothalamus | rn6 |
| Hypothalamus_c | Neural | Hypothalamus | rn6 |
| Preoptic_Area_a | Neural | Preoptic Area | rn6 |
| Preoptic_Area_b | Neural | Preoptic Area | rn6 |
| Striatum_a | Neural | Striatum | rn6 |
| Striatum_b | Neural | Striatum | rn6 |
| Thalamus | Neural | Thalamus | rn6 |
| Nucleus_Ac_a | Neural | Nucleus Acc | rn6 |
| Nucleus_Ac_b | Neural | Nucleus Acc | rn6 |
| Brain_stem | Neural | Brain Stem | rn6 |
| Spinal_cord_ab | Neural | Spinal Cord | rn6 |
| Spinal_cord_D_a | Neural | Spinal Cord | rn6 |
| Cort_Neurons_D16 | Neural | Neurons (Cultured) | rn6 |
| Cort_Neurons_D24 | Neural | Neurons (Cultured) | rn6 |
| Cort_Neurons_D4 | Neural | Neurons (Cultured) | rn6 |
| Cort_Neurons_D8 | Neural | Neurons (Cultured) | rn6 |
| Retina_a | Neural | Retina | rn6 |
| Retina_c | Neural | Retina | rn6 |
| Droot_ganglion_a | Neural | D Root Ganglion | rn6 |
| Pineal_gland_ac | Neural-related | Pineal Gland | rn6 |
| Pineal_gland_b | Neural-related | Pineal Gland | rn6 |
| Sciatic_nerve_a | Neural-related | Sciatic Nerve | rn6 |
| Choroid_plexus | Neural-related | Choroid Plexus | rn6 |
| Olfactory_Epithelium | Neural-related | Olfactory Epithelium | rn6 |
| Oligodendrocyte_a | Glia | Oligodendrocyte | rn6 |
| Schwann_cells | Glia | Schwann Cells | rn6 |
| Beta_cells_a | Endocrine | Beta Cells | rn6 |
| Beta_cells_b | Endocrine | Beta Cells | rn6 |
| Beta_cells_c | Endocrine | Beta Cells | rn6 |
| Islets_ab | Endocrine | Islets | rn6 |
| Cardiac_prog | Muscle | Cardiac Prog | rn6 |
| Cardiomyocite | Muscle | Cardiomyocite | rn6 |
| Cardiomyocite_Fem | Muscle | Cardiomyocite | rn6 |
| Cardiomyocite_Male | Muscle | Cardiomyocite | rn6 |
| Heart_A | Muscle | Heart | rn6 |
| Nucleus_SupraOpt | Neural | Nucleus SupraOpt | rn6 |
| Heart_Fem | Muscle | Heart | rn6 |
| Heart_L_Ventricle | Muscle | Heart | rn6 |
| Heart_Male | Muscle | Heart | rn6 |
| Muscle_a | Muscle | Muscle | rn6 |
| Muscle_Fem | Muscle | Muscle | rn6 |
| Muscle_Male | Muscle | Muscle | rn6 |
| Muscle_Quadriceps | Muscle | Quadriceps | rn6 |
| Muscle_Triceps | Muscle | Triceps | rn6 |
| Germ_cell_Male_A | Germ Cells | Germ Cells | rn6 |
| Germ_cell_Male_B | Germ Cells | Germ Cells | rn6 |
| Germ_cell_Male_C | Germ Cells | Germ Cells | rn6 |
| Testes_a | Testis | Testis | rn6 |
| Testes_b | Testis | Testis | rn6 |
| Spermatids | Testis | Spermatids | rn6 |
| Spermatocytes | Testis | Spermatocytes | rn6 |
| Spermatogonia | Testis | Spermatogonia | rn6 |
| Sperm_a | Testis | Sperm | rn6 |
| Sperm_b | Testis | Sperm | rn6 |
| Sperm_c | Testis | Sperm | rn6 |
| Sertoli_cells | Tissues | Sertoli Cells | rn6 |
| Ovary_a | Ovary | Ovary | rn6 |
| Skin_a | Epithelial | Skin | rn6 |
| Skin_old | Epithelial | Skin | rn6 |
| Skin_young | Epithelial | Skin | rn6 |
| Stomach_a | Digestive Tract | Stomach | rn6 |
| Small_intestine_a | Digestive Tract | Small Intestine | rn6 |
| Duodenum_a | Digestive Tract | Small Intestine | rn6 |
| Jejunum_a | Digestive Tract | Small Intestine | rn6 |
| Ileum_a | Digestive Tract | Small Intestine | rn6 |
| Colon_a | Digestive Tract | Colon | rn6 |
| Colon_b | Digestive Tract | Colon | rn6 |
| Liver_A | Tissues | Liver | rn6 |
| Liver_Fem | Tissues | Liver | rn6 |
| Liver_Male | Tissues | Liver | rn6 |
| Liver_old | Tissues | Liver | rn6 |
| Liver_young | Tissues | Liver | rn6 |
| Hepatocytes_a | Tissues | Hepatocytes | rn6 |
| Kidney_ab | Tissues | Kidney | rn6 |
| Kidney_cd | Tissues | Kidney | rn6 |
| Kidney_Fem | Tissues | Kidney | rn6 |
| Kidney_Male | Tissues | Kidney | rn6 |
| Glomeruli_ab | Tissues | Glomeruli | rn6 |
| Pancreas_whole_a | Tissues | Pancreas | rn6 |
| Uterus_A | Tissues | Uterus | rn6 |
| Vasc_smooth_a | Tissues | Smooth muscle | rn6 |
| Lung_a | Tissues | Lung | rn6 |
| Lung_Fem | Tissues | Lung | rn6 |
| Lung_Male | Tissues | Lung | rn6 |
| Thyroid | Tissues | Thyroid | rn6 |
| Adrenal_a | Tissues | Adrenal | rn6 |
| Adrenal_Fem | Tissues | Adrenal | rn6 |
| Adrenal_Male | Tissues | Adrenal | rn6 |
| Aorta | Tissues | Artery | rn6 |
| Mes_Artery_ab | Tissues | Artery | rn6 |
| Fibroblast_ab | Tissues | Fibroblasts | rn6 |
| Fibroblast_Endom_a | Tissues | Fibroblasts | rn6 |
| Spleen_a | Immune-Hematopoietic | Spleen | rn6 |
| Spleen_Fem | Immune-Hematopoietic | Spleen | rn6 |
| Spleen_Male | Immune-Hematopoietic | Spleen | rn6 |
| Thymus_a | Immune-Hematopoietic | Thymus | rn6 |
| Thymus_Fem | Immune-Hematopoietic | Thymus | rn6 |
| Thymus_Male | Immune-Hematopoietic | Thymus | rn6 |
| Blood_b_A | Immune-Hematopoietic | Blood | rn6 |
| Blood_b_B | Immune-Hematopoietic | Blood | rn6 |
| WBC_a | Immune-Hematopoietic | White Blood Cells | rn6 |
| Macrophage_a | Immune-Hematopoietic | Macrophages | rn6 |
| Rcho1_cells | Trophoblast Stem | TSC (Rcho1) | rn6 |
| INS1_cells | Cell Lines | INS1 cells | rn6 |
| CL_PC12_ab | Cell Lines | PC12 cells | rn6 |
| Glioblastoma | Cell Lines | C6 cells (Gliobl) | rn6 |
| Sample | Group | Subgroup | Assembly |
|---|---|---|---|
| Oocyte_GV_a | Early Development | Oocyte (GV) | bosTau6 |
| Oocyte_GV_b | Early Development | Oocyte (GV) | bosTau6 |
| Oocyte_MII_a | Early Development | Oocyte (MII) | bosTau6 |
| Oocyte_MII_b | Early Development | Oocyte (MII) | bosTau6 |
| Oocyte_MII_c | Early Development | Oocyte (MII) | bosTau6 |
| Embr_4C_a | Early Development | Embryo (4-cell) | bosTau6 |
| Embr_8C_a | Early Development | Embryo (8-cell) | bosTau6 |
| Embr_8C_b | Early Development | Embryo (8-cell) | bosTau6 |
| Embr_16C_a | Early Development | Embryo (16-cell) | bosTau6 |
| Embr_Blastocyst_a | Early Development | Blastocyst | bosTau6 |
| Embr_Blastocyst_e | Early Development | Blastocyst | bosTau6 |
| Embr_7d_c | Early Development | Blastocyst | bosTau6 |
| Embr_ICM | Early Development | Blastocyst (ICM) | bosTau6 |
| Embr_10d_c | Mid Development | Embryo (10days) | bosTau6 |
| Embr_13d_c | Mid Development | Embryo (13days) | bosTau6 |
| Embr_16d_c | Mid Development | Embryo (16days) | bosTau6 |
| Embr_19d_c | Mid Development | Embryo (19days) | bosTau6 |
| Embr_Brain_Dienc | Embryonic Brain | Hippoc+Dienceph | bosTau6 |
| Brain_b | Neural | Brain | bosTau6 |
| Brain_c | Neural | Brain | bosTau6 |
| Brain_Cortex_a | Neural | Cortex | bosTau6 |
| Brain_Hypoth | Neural | Hypothalamus | bosTau6 |
| Brain_SME | Neural | Brain (SME+Pons) | bosTau6 |
| Brain_Pituitary_a | Neural | Pituitary | bosTau6 |
| Brain_Pituitary_b | Neural | Pituitary | bosTau6 |
| Heart_c | Heart | Heart | bosTau6 |
| Muscle_b | Muscle | Muscle | bosTau6 |
| Muscle_biceps | Muscle | Muscle (Biceps) | bosTau6 |
| Muscle_c | Muscle | Muscle | bosTau6 |
| Muscle_LDM | Muscle | Muscle (LDM) | bosTau6 |
| Testis_a | Testis | Testis | bosTau6 |
| Testis_C | Testis | Testis | bosTau6 |
| Ovary_b | Ovary | Ovary | bosTau6 |
| Ovary_C | Ovary | Ovary | bosTau6 |
| Embr_TE | Placental | Trophectoderm | bosTau6 |
| Placenta_W | Placental | Placenta | bosTau6 |
| Endometrium_a | Tissues | Endometrium | bosTau6 |
| Uterus | Tissues | Uterus | bosTau6 |
| Skin | Epithelial | Skin | bosTau6 |
| Stomach_a | Digestive Tract | Stomach | bosTau6 |
| Stomach_b | Digestive Tract | Stomach | bosTau6 |
| Colon_c | Digestive Tract | Colon | bosTau6 |
| Colon_Intestine | Digestive Tract | Colon | bosTau6 |
| Liver_a | Tissues | Liver | bosTau6 |
| Liver_b | Tissues | Liver | bosTau6 |
| Liver_c | Tissues | Liver | bosTau6 |
| Kidney_a | Tissues | Kidney | bosTau6 |
| Kidney_b | Tissues | Kidney | bosTau6 |
| Kidney_C | Tissues | Kidney | bosTau6 |
| Lung | Tissues | Lung | bosTau6 |
| Tubular | Tissues | Ducts (various) | bosTau6 |
| Adipose_a | Tissues | Adipose | bosTau6 |
| Adipose_b | Tissues | Adipose | bosTau6 |
| Adipose_C | Tissues | Adipose | bosTau6 |
| Bone_marrow | Immune-Hematopoietic | Bone Marrow | bosTau6 |
| LymphNode_a | Immune-Hematopoietic | Lymph Node | bosTau6 |
| Spleen | Immune-Hematopoietic | Spleen | bosTau6 |
| WBC | Immune-Hematopoietic | White Blood cells | bosTau6 |
| Sample | Group | Subgroup | Assembly |
|---|---|---|---|
| Oocyte_A | Early Embryo | Oocyte | galGal4 |
| Zygote_A | Early Embryo | Zygote | galGal4 |
| Embr_EGKI_A | Early Embryo | Embryo (EGKI) | galGal4 |
| Embr_EGKIII_A | Early Embryo | Embryo (EGKIII) | galGal4 |
| Embr_EGKVI_A | Early Embryo | Embryo (EGKVI) | galGal4 |
| Embr_EGKVIII_A | Early Embryo | Embryo (EGKVIII) | galGal4 |
| Embr_EGKX_A | Early Embryo | Embryo (EGKX) | galGal4 |
| Embr_StageX_a | Early Embryo | Embryo (EGKX) | galGal4 |
| Embr_StageX_b | Early Embryo | Embryo (EGKX) | galGal4 |
| Embr_StageX_c | Early Embryo | Embryo (EGKX) | galGal4 |
| Embr_Blastoderm_Fem | Early Embryo | Blastoderm (F) | galGal4 |
| Embr_Blastoderm_Male | Early Embryo | Blastoderm (M) | galGal4 |
| Embr_PrimStreak | Early Embryo | Primitive Streak | galGal4 |
| Embr_HH4 | Early Embryo | Embryo (HH4) | galGal4 |
| Embr_HH6 | Early Embryo | Embryo (HH6) | galGal4 |
| Embr_HH11_a | Mid Embryo | Embryo (HH11) | galGal4 |
| Embr_HH11_b | Mid Embryo | Embryo (HH11) | galGal4 |
| Embr_HH14_a | Mid Embryo | Embryo (HH14) | galGal4 |
| Embr_HH14_b | Mid Embryo | Embryo (HH14) | galGal4 |
| Embr_HH16 | Mid Embryo | Embryo (HH16) | galGal4 |
| Embr_HH19 | Mid Embryo | Embryo (HH19) | galGal4 |
| Embr_HH21_22 | Mid Embryo | Embryo (HH21-22) | galGal4 |
| Embr_HH25_26 | Mid Embryo | Embryo (HH25-26) | galGal4 |
| Embr_HH28 | Mid Embryo | Embryo (HH28) | galGal4 |
| Embr_HH30_31 | Mid Embryo | Embryo (HH30-31) | galGal4 |
| Embr_HH32 | Mid Embryo | Embryo (HH32) | galGal4 |
| Embr_HH36 | Mid Embryo | Embryo (HH36) | galGal4 |
| Embr_HH38 | Mid Embryo | Embryo (HH38) | galGal4 |
| Embr_Scales | Embryo Tissues | Embryonic Scales | galGal4 |
| Neural_Crest | Neural Crest | Neural Crest | galGal4 |
| Cerebellum_a | Neural | Cerebellum | galGal4 |
| Cerebellum_b | Neural | Cerebellum | galGal4 |
| Optic_Lobe | Neural | Optic Lobe | galGal4 |
| Telencephalon | Neural | Telencephalon | galGal4 |
| Whole_Brain | Neural | Whole Brain | galGal4 |
| Brain_Fem | Neural | Whole Brain (F) | galGal4 |
| Brain_Male | Neural | Whole Brain (M) | galGal4 |
| Muscle_b | Muscle | Muscle (F) | galGal4 |
| Muscle_c | Muscle | Muscle | galGal4 |
| Muscle_a | Muscle | Muscle | galGal4 |
| Muscle_Fem | Muscle | Muscle (F) | galGal4 |
| Muscle_Male | Muscle | Muscle (M) | galGal4 |
| Heart_a | Heart | Heart | galGal4 |
| Heart_b | Heart | Heart | galGal4 |
| Heart_Fem | Heart | Heart (F) | galGal4 |
| Heart_Male | Heart | Heart (M) | galGal4 |
| Fetal_MaleGonads | Fetal Gonads | Fetal Gonads (M) | galGal4 |
| Testis_a | Testis | Testis | galGal4 |
| Testis_b | Testis | Testis | galGal4 |
| Testis_c | Testis | Testis | galGal4 |
| Fetal_FemGonads | Fetal Gonads | Fetal Gonads (F) | galGal4 |
| Ovary_a | Ovary | Ovary | galGal4 |
| Ovary_b | Ovary | Ovary | galGal4 |
| Ovary_c | Ovary | Ovary | galGal4 |
| Ovary_d | Ovary | Ovary | galGal4 |
| Skin_b | Skin | Skin | galGal4 |
| Skin_c | Skin | Skin | galGal4 |
| Skin_a | Skin | Skin | galGal4 |
| Proventriculus | Digestive Tract | Proventriculus | galGal4 |
| Small_Intestine | Digestive Tract | Intestine | galGal4 |
| Duodenum | Digestive Tract | Duodenum | galGal4 |
| Ileum_b | Digestive Tract | Ileum | galGal4 |
| Ileum_a | Digestive Tract | Ileum | galGal4 |
| Colon_a | Digestive Tract | Colon | galGal4 |
| Abdominal_Fat_b | Tissues | Adipose | galGal4 |
| Abdominal_Fat_c | Tissues | Adipose | galGal4 |
| Abdominal_Fat_a | Tissues | Adipose | galGal4 |
| Gizzard_Fat | Tissues | Adipose | galGal4 |
| Kidney_a | Tissues | Kidney | galGal4 |
| Kidney_Fem | Tissues | Kidney | galGal4 |
| Kidney_b | Tissues | Kidney | galGal4 |
| Kidney_Male | Tissues | Kidney | galGal4 |
| Liver_a | Tissues | Liver | galGal4 |
| Liver_Fem | Tissues | Liver | galGal4 |
| Liver_b | Tissues | Liver | galGal4 |
| Liver_Male | Tissues | Liver | galGal4 |
| Lung_a | Tissues | Lung | galGal4 |
| Lung_Fem | Tissues | Lung | galGal4 |
| Lung_b | Tissues | Lung | galGal4 |
| Lung_Male | Tissues | Lung | galGal4 |
| Magnum | Tissues | Magnum | galGal4 |
| Pancreas | Tissues | Pancreas | galGal4 |
| Thyroid | Tissues | Thyroid | galGal4 |
| Trachea | Tissues | Trachea | galGal4 |
| Tibial_bone | Immune-Hematopoietic | Tibial Bone | galGal4 |
| Bursa_Fem | Immune-Hematopoietic | Bursa | galGal4 |
| Bursa | Immune-Hematopoietic | Bursa | galGal4 |
| Bursa_Male | Immune-Hematopoietic | Bursa | galGal4 |
| Cecal_Tonsils_a | Immune-Hematopoietic | Cecal Tonsils | galGal4 |
| Cecal_Tonsils_b | Immune-Hematopoietic | Cecal Tonsils | galGal4 |
| Cecal_Tonsils_c | Immune-Hematopoietic | Cecal Tonsils | galGal4 |
| Harderian_Gland | Immune-Hematopoietic | Harderian Gland | galGal4 |
| Spleen_a | Immune-Hematopoietic | Spleen | galGal4 |
| Spleen_Fem | Immune-Hematopoietic | Spleen | galGal4 |
| Spleen_b | Immune-Hematopoietic | Spleen | galGal4 |
| Spleen_Male | Immune-Hematopoietic | Spleen | galGal4 |
| Thymus | Immune-Hematopoietic | Thymus | galGal4 |
| BMD_Macrophages | Immune-Hematopoietic | BMD Macrophages | galGal4 |
| CL_DF1 | Cell Line | DF1 | galGal4 |
| CL_DT40_a | Cell Line | DT40 | galGal4 |
| CL_DT40_b | Cell Line | DT40 | galGal4 |
| Sample | Group | Subgroup | Assembly |
|---|---|---|---|
| Embr_StageX_a | EarlyDev | StageX | galGal3 |
| Embr_StageX_b | EarlyDev | StageX | galGal3 |
| Embr_StageX_c | EarlyDev | StageX | galGal3 |
| Embr_Blastoderm_Fem | EarlyDev | Blastoderm | galGal3 |
| Embr_Blastoderm_Male | EarlyDev | Blastoderm | galGal3 |
| Embr_PrimStreak | EarlyDev | Primitive_Streak | galGal3 |
| Embr_HH4_c | EarlyDev | HH4 | galGal3 |
| Embr_HH6 | EarlyDev | HH6 | galGal3 |
| Embr_HH11 | MidDev | HH11 | galGal3 |
| Embr_HH11_c | MidDev | HH11 | galGal3 |
| Embr_HH14 | MidDev | HH14 | galGal3 |
| Embr_HH14_c | MidDev | HH14 | galGal3 |
| Embr_HH16 | MidDev | HH16 | galGal3 |
| Embr_HH19 | MidDev | HH19 | galGal3 |
| Embr_HH21_22_c | MidDev | HH21_22 | galGal3 |
| Embr_HH25_26_c | MidDev | HH25_26 | galGal3 |
| Embr_HH28 | MidDev | HH28 | galGal3 |
| Embr_7d | MidDev | HH30_31 | galGal3 |
| Embr_HH32_c | MidDev | HH32 | galGal3 |
| Embr_HH36_c | MidDev | HH36 | galGal3 |
| Embr_HH38 | MidDev | HH38 | galGal3 |
| Fetal_FemGonads | EmbrGonads | Fetal_Fem_Gonads | galGal3 |
| Fetal_MaleGonads | EmbrGonads | Fetal_Male_Gonads | galGal3 |
| Embr_Scales | EmbrScales | Embr_Scales | galGal3 |
| NeuralCrest | NeuralCrest | Neural_Crest | galGal3 |
| Brain_BNP | Neural | Whole_Brain | galGal3 |
| Brain_Fem | Neural | Whole_Brain | galGal3 |
| Brain_Male | Neural | Whole_Brain | galGal3 |
| Brain_Telencephalon | Neural | Telencephalon | galGal3 |
| CerebellumP | Neural | Cerebellum | galGal3 |
| Heart_BNP | Muscle | Heart | galGal3 |
| Heart_Fem | Muscle | Heart | galGal3 |
| Heart_Male | Muscle | Heart | galGal3 |
| Muscle_BN | Muscle | Muscle | galGal3 |
| Muscle_Fem | Muscle | Muscle | galGal3 |
| Muscle_Male | Muscle | Muscle | galGal3 |
| Testes_Male | Testis | Testis | galGal3 |
| Testis_BP | Testis | Testis | galGal3 |
| Ovarium_Fem | Ovary | Ovarium | galGal3 |
| ColonB | Digestive_tract | Colon | galGal3 |
| Liver_BNP | Tissues | Liver | galGal3 |
| Liver_Fem | Tissues | Liver | galGal3 |
| Liver_Male | Tissues | Liver | galGal3 |
| Kidney_BNP | Tissues | Kidney | galGal3 |
| Kidney_Fem | Tissues | Kidney | galGal3 |
| Kidney_Male | Tissues | Kidney | galGal3 |
| LungB | Tissues | Lung | galGal3 |
| Lung_Fem | Tissues | Lung | galGal3 |
| Lung_Male | Tissues | Lung | galGal3 |
| Magnum | Tissues | Magnum | galGal3 |
| AbdominalFat | Tissues | Abdominal_Fat | galGal3 |
| Tibial_bone | Immune_hematopoiesis | Tibial_bone | galGal3 |
| Bursa_Fem | Immune_hematopoiesis | Bursa | galGal3 |
| Bursa_Male | Immune_hematopoiesis | Bursa | galGal3 |
| SpleenB | Immune_hematopoiesis | Spleen | galGal3 |
| Spleen_Fem | Immune_hematopoiesis | Spleen | galGal3 |
| Spleen_Male | Immune_hematopoiesis | Spleen | galGal3 |
| BMDMacroph | Immune_hematopoiesis | BMD_Macrophages | galGal3 |
| CL_DF1 | CLines | CL_DF1 | galGal3 |
| CL_DT40 | CLines | CL_DT40 | galGal3 |
| CL_DT40_c | CLines | CL_DT40 | galGal3 |
| Sample | Group | Subgroup | Assembly |
|---|---|---|---|
| Eggs_A | Early Development | Eggs | danRer10 |
| Embr_2C4C_M | Early Development | Embryo (2-4-cell) | danRer10 |
| Embr_2hpf_c | Early Development | Embryo (2hpf) | danRer10 |
| Embr_2hpf_H | Early Development | Embryo (2hpf) | danRer10 |
| Embr_1K | Early Development | Embryo (1K-cell) | danRer10 |
| Embr_oblong_A | Early Development | Embryo (Oblong) | danRer10 |
| Embr_Sphere_A | Early Development | Embryo (Sphere) | danRer10 |
| Embr_Dome | Early Development | Embryo (Dome) | danRer10 |
| Embr_Shield_A | Early Development | Embryo (Shield) | danRer10 |
| Embr_8hpf_H | Early Development | Embryo (8hpf) | danRer10 |
| Embr_Bud | Early Development | Embryo (Bud) | danRer10 |
| Embr_12hpf_H | Early Development | Embryo (12hpf) | danRer10 |
| Embr_10som | Mid Development | Embryo (10-somites) | danRer10 |
| Embr_16hpf_H | Mid Development | Embryo (16hpf) | danRer10 |
| Embr_20hpf_H | Mid Development | Embryo (20hpf) | danRer10 |
| Embr_24hpf_A | Mid Development | Embryo (24hpf) | danRer10 |
| Embr_26hpf_H | Mid Development | Embryo (26hpf) | danRer10 |
| Embr_28hpf | Mid Development | Embryo (28hpf) | danRer10 |
| Embr_32hpf_G | Mid Development | Embryo (32hpf) | danRer10 |
| Embr_48hpf_A | Mid Development | Embryo (48hpf) | danRer10 |
| Embr_48hpf_B | Mid Development | Embryo (48hpf) | danRer10 |
| Embr_72hpf_A | Late Development | Embryo (72hpf) | danRer10 |
| Embr_4dpf_A | Late Development | Embryo (4dpf) | danRer10 |
| Embr_5dpf_A | Late Development | Embryo (5dpf) | danRer10 |
| Embr_6dpf_A | Late Development | Embryo (6dpf) | danRer10 |
| Embr_7dpf_A | Late Development | Embryo (7dpf) | danRer10 |
| PGC_7h_A | Germ Line | Germ cells (7 hpf) | danRer10 |
| PGC_7h_B | Germ Line | Germ cells (7 hpf) | danRer10 |
| PGC_24h_A | Germ Line | Germ cells (24 hpf) | danRer10 |
| PGC_24h_B | Germ Line | Germ cells (24 hpf) | danRer10 |
| Embr_EVL_Pos | Embryonic Tissues | EVL cells (11 hpf) | danRer10 |
| Embr_EVL_Neg | Embryonic Tissues | Non-EVL cells (11 hpf) | danRer10 |
| Embr_Gata1_cells | Embryonic Tissues | Gata1+ cells (24-48hpf) | danRer10 |
| Embr_Heart_48hpf | Embryonic Muscle | Embryonic Heart (48hpf) | danRer10 |
| Embr_Head_5_6dpf | Embryonic Brain | Embryonic Head (5-6dpf) | danRer10 |
| Head | Neural | Head | danRer10 |
| Brain_4_fem | Neural | Whole Brain | danRer10 |
| Brain_4_male | Neural | Whole Brain | danRer10 |
| Brain_A | Neural | Whole Brain | danRer10 |
| Brain_Telenc | Neural | Telencephalon | danRer10 |
| Forebrain_Cont | Neural | Forebrain | danRer10 |
| Inf_Olive_Nuc | Neural | Inf Olive Nucleus | danRer10 |
| Midbrain_Cont | Neural | Midbrain | danRer10 |
| Cerebellum | Neural | Cerebellum | danRer10 |
| Hindbrain_Cont | Neural | Hindbrain | danRer10 |
| SpinalCord_Sham | Neural | Spinal cord | danRer10 |
| Eurydendroid_cells | Neural | Eurydendroid cells | danRer10 |
| Granule_cells | Neural | Granule cells | danRer10 |
| Purkinje_cells | Neural | Purkinje cells | danRer10 |
| Neurons_HuC_72hpf | Neural | Neurons (HuC+, 72hpf) | danRer10 |
| Neurons_SpCord_HuC_20hpf | Neural | Spinal Cord (HuC+, 20hpf) | danRer10 |
| Neurons_SpCord_Olig2_20hpf | Neural | Spinal Cord (Olig2+, 20hpf) | danRer10 |
| Rods_XOPS_GFPpos | Neural | Rods | danRer10 |
| Retina_Adult_a | Neural | Retina | danRer10 |
| Retina_Adult_b | Neural | Retina | danRer10 |
| Bergmann_glia | Glia | Bergmann Glia | danRer10 |
| Heart_A | Muscle | Heart | danRer10 |
| Muscle_A | Muscle | Muscle | danRer10 |
| Muscle_B | Muscle | Muscle | danRer10 |
| Testis_A | Testis | Testis | danRer10 |
| Sperm | Testis | Sperm | danRer10 |
| Ovary_A | Ovary | Ovary | danRer10 |
| Skin | Epithelial | Skin | danRer10 |
| Adipose_a | Tissues | Adipose | danRer10 |
| Pancreas_AlphaCells | Endocrine Pancreas | Alpha cells | danRer10 |
| Pancreas_BetaCells | Endocrine Pancreas | Beta cells | danRer10 |
| Pancreas_DeltaCells | Endocrine Pancreas | Delta cells | danRer10 |
| Pancreas_Acinar | Tissues | Acinar pancreas | danRer10 |
| Pancreas_CAC | Tissues | Acinar pancreas | danRer10 |
| Pancreas_nonCAC | Tissues | Non-acinar pancreas | danRer10 |
| Intestine_A | Digestive Tract | Intestine | danRer10 |
| Kidney_A | Tissues | Kidney | danRer10 |
| Liver_A | Tissues | Liver | danRer10 |
| SwimBladder | Tissues | Swim Bladder | danRer10 |
| Gills_A | Tissues | Gills | danRer10 |
| Pericyte | Tissues | Pericyte | danRer10 |
| Pect_Fin | Tissues | Pectoral Fin | danRer10 |
| Bones | Tissues | Bones | danRer10 |
| Spleen_A | Immune-Hematopoietic | Spleen | danRer10 |
| Granulocytes | Immune-Hematopoietic | Granulocytes | danRer10 |
| Sample | Group | Subgroup | Assembly |
|---|---|---|---|
| Embr_0_2h_a | Embryos | Embryo (0-2h) | dm6 |
| Embr_2_4h_a | Embryos | Embryo (2-4h) | dm6 |
| Embr_4_6h_a | Embryos | Embryo (4-6h) | dm6 |
| Embr_6_8h_a | Embryos | Embryo (6-8h) | dm6 |
| Embr_8_10h_a | Embryos | Embryo (8-10h) | dm6 |
| Embr_10_12h_a | Embryos | Embryo (10-12h) | dm6 |
| Embr_12_14h_a | Embryos | Embryo (12-14h) | dm6 |
| Embr_14_16h_a | Embryos | Embryo (14-16h) | dm6 |
| Embr_16_18h_a | Embryos | Embryo (16-18h) | dm6 |
| Embr_18_20h_a | Embryos | Embryo (18-20h) | dm6 |
| Embr_20_22h_a | Embryos | Embryo (20-22h) | dm6 |
| Embr_22_24h_a | Embryos | Embryo (22-24h) | dm6 |
| Larva_L1_a | Larva | Larva (L1) | dm6 |
| Larva_L2_a | Larva | Larva (L2) | dm6 |
| Larva_L3_12hpm_a | Larva | Larva (L3 12hpm) | dm6 |
| Larva_L3_PS1_2_a | Larva | Larva (L3 PS1-2) | dm6 |
| Larva_L3_PS3_6_a | Larva | Larva (L3 PS3-6) | dm6 |
| Larva_L3_PS7_9_a | Larva | Larva (L3 PS7-9) | dm6 |
| Pupae_12h_aWPP_a | Pupae | Pupae (12-24h) | dm6 |
| Pupae_24h_aWPP_a | Pupae | Pupae (12-24h) | dm6 |
| Pupae_2d_aWPP_a | Pupae | Pupae (2d-4d) | dm6 |
| Pupae_3d_aWPP_a | Pupae | Pupae (2d-4d) | dm6 |
| Pupae_4d_aWPP_a | Pupae | Pupae (2d-4d) | dm6 |
| WhitePrePupae_a | PrePupae | White PrePupae | dm6 |
| Adult_Fem_1d_a | Tissues | Whole Adult (F) | dm6 |
| Adult_Fem_30d_a | Tissues | Whole Adult (F) | dm6 |
| Adult_Fem_5d_a | Tissues | Whole Adult (F) | dm6 |
| Adult_Male_1d_a | Tissues | Whole Adult (M) | dm6 |
| Adult_Male_30d_a | Tissues | Whole Adult (M) | dm6 |
| Adult_Male_5d_a | Tissues | Whole Adult (M) | dm6 |
| Carcass_Larva_a | Tissues | Carcass (Larva) | dm6 |
| Carcass_Larva_L3_a | Tissues | Carcass (Larva) | dm6 |
| Carcass_Adult | Tissues | Carcass (Adult) | dm6 |
| Carcass_Fem_a | Tissues | Carcass (Adult) | dm6 |
| Carcass_Male_a | Tissues | Carcass (Adult) | dm6 |
| Head_Adult_Mated_Fem | Head | Head (Adult) | dm6 |
| Head_Adult_Mated_Male | Head | Head (Adult) | dm6 |
| Head_Adult_Virgin_Fem | Head | Head (Adult) | dm6 |
| Head_Fem_a | Head | Head (Adult) | dm6 |
| Head_Male_a | Head | Head (Adult) | dm6 |
| CNS_Larva_a | Developing CNS | CNS (Larva) | dm6 |
| CNS_Larva_L3_a | Developing CNS | CNS (Larva) | dm6 |
| CNS_Prepupae_a | Developing CNS | CNS (Prepupae) | dm6 |
| Brain_a | Neural | Brain | dm6 |
| Brain_b | Neural | Brain | dm6 |
| Brain_Fem_a | Neural | Brain (F) | dm6 |
| Brain_Male_a | Neural | Brain (M) | dm6 |
| Ganglion_TA_Fem_a | Neural | Ganglion TA | dm6 |
| Ganglion_TA_Male_a | Neural | Ganglion TA | dm6 |
| OpticLobe_b | Neural | Optic Lobe | dm6 |
| Neurons_ChAT | Neural | Neurons (ChAT) | dm6 |
| Neurons_Dm | Neural | Neurons (Dm) | dm6 |
| Neurons_Gad1 | Neural | Neurons (Gad1) | dm6 |
| Neurons_Kenyon | Neural | Neurons (Kenyon) | dm6 |
| Neurons_Larva | Neural | Neurons (Larva) | dm6 |
| Neurons_Octopam | Neural | Neurons (Tdc2) | dm6 |
| Neurons_R57C10 | Neural | Neurons (nSyb) | dm6 |
| Neurons_VGlut | Neural | Neurons (VGlut) | dm6 |
| Eye_Fem_a | Eye | Eye | dm6 |
| Eye_Male_a | Eye | Eye | dm6 |
| Photoreceptor_dark | Photoreceptor | Photoreceptor | dm6 |
| Photoreceptor_light | Photoreceptor | Photoreceptor | dm6 |
| Photoreceptors_M | Photoreceptor | Photoreceptor | dm6 |
| Antenna_Fem_a | Antenna | Antenna | dm6 |
| Antenna_Male_a | Antenna | Antenna | dm6 |
| Glia_Eg | Glia | Glia (Eg) | dm6 |
| Glia_Larva_NB | Glia | Glia (Larva) | dm6 |
| Glia_Mg | Glia | Glia (Mg) | dm6 |
| Glia_Psg | Glia | Glia (Psg) | dm6 |
| Muscle_IFM_a | Muscle | Muscle | dm6 |
| Muscle_TD_a | Muscle | Muscle | dm6 |
| Testis_4dpe_a | Testis | Testis | dm6 |
| Testis_a | Testis | Testis | dm6 |
| Testis_b | Testis | Testis | dm6 |
| Testis_c | Testis | Testis | dm6 |
| Ovary_4dpe_a | Ovary | Ovary | dm6 |
| Ovary_a | Ovary | Ovary | dm6 |
| Ovary_Virgin | Ovary | Ovary | dm6 |
| EyeAntennae_ImDisc_a | Imaginal Discs | Imaginal Discs | dm6 |
| Imaginal_Discs_L3_a | Imaginal Discs | Imaginal Discs | dm6 |
| Wing_pouch_L3_Tryp_a | Imaginal Discs | Wing Pouch (L3) | dm6 |
| Epidermis_a | Epidermis | Epidermis | dm6 |
| FatBody_c | Fat Body | Fat Body (Adult) | dm6 |
| FatBody_Fem_a | Fat Body | Fat Body (Adult) | dm6 |
| FatBody_Male_a | Fat Body | Fat Body (Adult) | dm6 |
| FatBody_Old_a | Fat Body | Fat Body (Adult) | dm6 |
| FatBody_Young_a | Fat Body | Fat Body (Adult) | dm6 |
| FatBody_Larva_a | Fat Body | Fat Body (Larva) | dm6 |
| FatBody_Larva_L3_a | Fat Body | Fat Body (Larva) | dm6 |
| FatBody_Prepupae_a | Fat Body | Fat Body (Larva) | dm6 |
| Gut_Adult_a | Gut | Gut (Adult) | dm6 |
| Gut_Old_b | Gut | Gut (Adult) | dm6 |
| Gut_Young_b | Gut | Gut (Adult) | dm6 |
| Gut_Larva_L3_a | Gut | Gut (Larva) | dm6 |
| Midgut_Fem_a | Gut | Midgut (Adult) | dm6 |
| Midgut_Male_a | Gut | Midgut (Adult) | dm6 |
| Midgut_Larva_a | Gut | Midgut (Larva) | dm6 |
| Hindgut_Fem_a | Gut | Hindgut (Adult) | dm6 |
| Hindgut_Male_a | Gut | Hindgut (Adult) | dm6 |
| Hindgut_Larva_a | Gut | Hindgut (Larva) | dm6 |
| Accessory_Glands_Male_a | Tissues | Accessory Glands | dm6 |
| Accessory_Glands_Male_b | Tissues | Accessory Glands | dm6 |
| Anal_Pad_Fem_a | Tissues | Anal Pad | dm6 |
| Anal_Pad_Male_a | Tissues | Anal Pad | dm6 |
| Crop_Fem_a | Tissues | Crop | dm6 |
| Crop_Male_a | Tissues | Crop | dm6 |
| MalpighianTube_b | Tissues | Malpighian Tubule (Adult) | dm6 |
| MalpighianTube_Fem_bc | Tissues | Malpighian Tubule (Adult) | dm6 |
| MalpighianTubes_Fem_a | Tissues | Malpighian Tubule (Adult) | dm6 |
| MalpighianTubes_Male_a | Tissues | Malpighian Tubule (Adult) | dm6 |
| MalpighianTubes_Larva_a | Tissues | Malpighian Tubule (Larva) | dm6 |
| Salivary_Gland_Fem_a | Tissues | Salivary Gland (Adult) | dm6 |
| Salivary_Gland_Larva_a | Tissues | Salivary Gland (Adult) | dm6 |
| Salivary_Gland_Male_a | Tissues | Salivary Gland (Adult) | dm6 |
| Salivary_Glands_Larva_L3_a | Tissues | Salivary Gland (Larva) | dm6 |
| Salivary_Glands_Prepupae_a | Tissues | Salivary Gland (Larva) | dm6 |
| Spermatheca_Mated_Fem_a | Tissues | Spermatheca | dm6 |
| Spermatheca_Virgin_Fem_a | Tissues | Spermatheca | dm6 |
| Trachea_Larva_a | Tissues | Trachea | dm6 |
| CL_S2_a | Cell Lines | S2 Cell Line | dm6 |
| CL_S2_b | Cell Lines | S2 Cell Line | dm6 |