Difference between revisions of "Samples"

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{{#CouchDB_Query_field:tag=select|query=AND sample:$1|values=,hg38,hg19,mm10,mm9,bosTau6,galGal4,galGal3,danRer10,dm6,araTha10|id=genome-select|default={{#urldecode:{{#urlget:genome|}}}}}}
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<div class="landing">
{{#CouchDB_Query_table:type=couchdb-lucene-query|full=true|index=tissues|db={{#getCouchDBinstance:}}|query=(id:$1* OR name:$1*)|text={{#urlget:query|}}|header=Sample id,Name,Assembly|fields=#id,name,#genome|prefixurl=id:/sample/,genome:/assembly/|extra=#genome-select}}
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<h4>Available genomes</h4>
 +
<div class="landing-header"><ul>{{#BioDB:assemblies_landing}}{{#BioDB_table_template:Template:GenomeLandingList}}{{#BioDB_clear:}}</ul></div>
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<div class="landing-body">{{#BioDB:assemblies_landing}}{{#BioDB_table_template:Template:SampleLanding_List}}{{#BioDB_clear:}}</div>
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</div>

Latest revision as of 13:47, 21 December 2020

Available genomes

  • Human (hg38)
  • Human (hg19)
  • Mouse (mm10)
  • Mouse (mm9)
  • Rat (rn6)
  • Cow (bosTau6)
  • Chicken (galGal4)
  • Chicken (galGal3)
  • Zebrafish (danRer10)
  • Fruitfly (dm6)

SampleGroupSubgroupAssembly
 Oocyte_a_A Early Development Oocyte hg38
 Zygote_a_A Early Development Zygote hg38
 Embr_2C_a_A Early Development Embryo (2-cell) hg38
 Embr_2C_a_B Early Development Embryo (2-cell) hg38
 Embr_4C_a_A Early Development Embryo (4-cell) hg38
 Embr_4C_a_B Early Development Embryo (4-cell) hg38
 Embr_4C_a_C Early Development Embryo (4-cell) hg38
 Embr_8C_a_A Early Development Embryo (8-cell) hg38
 Embr_8C_a_B Early Development Embryo (8-cell) hg38
 Embr_8C_a_C Early Development Embryo (8-cell) hg38
 Embr_8C_a_D Early Development Embryo (8-cell) hg38
 Embr_Morula_a_A Early Development Embryo (morula) hg38
 Embr_Morula_a_B Early Development Embryo (morula) hg38
 Embr_ICM_a_A ESC Embryo (ICM) hg38
 ESC_H1_a ESC ESC (H1) hg38
 ESC_H1_b ESC ESC (H1) hg38
 ESC_H1_c ESC ESC (H1) hg38
 ESC_H1_d ESC ESC (H1) hg38
 ESC_H9_a ESC ESC (H9) hg38
 ESC_H9_b ESC ESC (H9) hg38
 iPS_a iPS iPS cells hg38
 iPS_b iPS iPS cells hg38
 Embr_TE_a_A Placental Embryo (TE) hg38
 Embr_TE_a_B Placental Embryo (TE) hg38
 HFDPC Precursors HFDPC hg38
 MSC Precursors Mesenchymal SCs hg38
 NCC_Cranial_c Neural_crest Neural crest cells hg38
 NCC_default_b Neural_crest Neural crest cells hg38
 NCC_Enteric_b Neural_crest Neural crest cells hg38
 NCC_Melano_biased_b Neural_crest Neural crest cells hg38
 NPC_a NPC NPC hg38
 NPC_b NPC NPC hg38
 Embr_Forebrain_St13_14 Embryonic Brain Forebrain (St13-14) hg38
 Embr_Forebrain_St17_20 Embryonic Brain Forebrain (St17-20) hg38
 Embr_Forebrain_St22_23 Embryonic Brain Forebrain (St22-23) hg38
 Embr_Forebrain_9_12wpc Embryonic Brain Forebrain (9-12 wpc) hg38
 Embr_Cortex_13_17wpc Embryonic Brain Cortex (13-17 wpc) hg38
 Whole_Brain_b Neural Whole Brain hg38
 Cortex Neural Cortex hg38
 Frontal_Gyrus_young Neural Frontal Gyrus (young) hg38
 Frontal_Gyrus_old Neural Frontal Gyrus (old) hg38
 Sup_Temporal_Gyrus Neural Sup Temporal Gyrus hg38
 Cerebellum_a Neural Cerebellum hg38
 Cerebellum_c Neural Cerebellum hg38
 Neurons Neural Neurons hg38
 Neurons_Cortex_KCl_0h Neural Neurons (KCl, 0h) hg38
 Neurons_Cortex_KCl_1h Neural Neurons (KCl, 1h) hg38
 Neurons_Cortex_KCl_6h Neural Neurons (KCl, 6h) hg38
 Retina_a Neural Retina hg38
 Retina_macular Neural Retina hg38
 Retina_peripheral Neural Retina hg38
 Astrocytes Glia Astrocytes hg38
 Microglia Glia Microglia hg38
 Oligodendrocytes Glia Oligodendrocytes hg38
 Pancreas_Alpha_Old Tissues Pancreas (Alpha cells) hg38
 Pancreas_Alpha_Young Tissues Pancreas (Alpha cells) hg38
 Pancreas_Beta_Old Tissues Pancreas (Beta cells) hg38
 Pancreas_Beta_Young Tissues Pancreas (Beta cells) hg38
 Pancreas_Acinar_Old Tissues Pancreas (Acinar) hg38
 Pancreas_Acinar_Young Tissues Pancreas (Acinar) hg38
 Pancreas_Duct_Old Tissues Pancreas (Duct) hg38
 Pancreas_Duct_Young Tissues Pancreas (Duct) hg38
 Heart_a Muscle Heart hg38
 Heart_b Muscle Heart hg38
 Heart_c Muscle Heart hg38
 Muscle_b Muscle Muscle hg38
 Muscle_d Muscle Muscle hg38
 Muscle_e Muscle Muscle hg38
 Testis_a Testis Testis hg38
 Testis_b Testis Testis hg38
 Testis_c Testis Testis hg38
 Ovary_a Ovary Ovary hg38
 Ovary_b Ovary Ovary hg38
 Placenta_a Placental Placenta hg38
 Placenta_b Placental Placenta hg38
 Placenta_c Placental Placenta hg38
 Decidua Placental Decidua hg38
 Amnion Placental Amnion hg38
 Chorion Placental Chorion hg38
 Skin_a Epithelial Skin hg38
 Skin_b Epithelial Skin hg38
 Skin_c Epithelial Skin hg38
 Skin_d Epithelial Skin hg38
 Placenta_Epith Epithelial Placental Epithelium hg38
 EpithelialCells Epithelial Epithelial Cells hg38
 Breast_Epith_a Epithelial Breast Epithelium hg38
 HMEpC_a Epithelial Breast Epithelium hg38
 Stomach_a Digestive Tract Stomach hg38
 Stomach_b Digestive Tract Stomach hg38
 Small_intestine Digestive Tract Small intestine hg38
 Colon_b Digestive Tract Colon hg38
 Colon_sigmoid Digestive Tract Colon hg38
 Colon_transverse Digestive Tract Colon hg38
 Liver_a Tissues Liver hg38
 Liver_b Tissues Liver hg38
 Liver_c Tissues Liver hg38
 Kidney_d Tissues Kidney hg38
 Kidney_e Tissues Kidney hg38
 Kidney_f Tissues Kidney hg38
 Lung_b Tissues Lung hg38
 Lung_e Tissues Lung hg38
 Lung_f Tissues Lung hg38
 EndomStromCells Tissues Endometrium hg38
 Adipose_b Tissues Adipose hg38
 Adipose_c Tissues Adipose hg38
 Adipose_d Tissues Adipose hg38
 Breast_a Tissues Breast hg38
 Adrenal_b Tissues Adrenal hg38
 Adrenal_c Tissues Adrenal hg38
 Prostate_b Tissues Prostate hg38
 Prostate_c Tissues Prostate hg38
 Prostate_d Tissues Prostate hg38
 Thyroid_b Tissues Thyroid hg38
 Thyroid_c Tissues Thyroid hg38
 Thyroid_d Tissues Thyroid hg38
 Bladder_a Tissues Bladder hg38
 EndothCells Tissues Endothelium hg38
 Brain_Endoth Tissues Endothelium hg38
 Melanocytes Tissues Melanocytes hg38
 Fibroblasts Cells Fibroblasts hg38
 GLS_cells Cells Various primary cells hg38
 Bone_marrow_a Immune-Hematopoietic Bone Marrow hg38
 Bone_marrow_b Immune-Hematopoietic Bone Marrow hg38
 Bone_marrow_c Immune-Hematopoietic Bone Marrow hg38
 Spleen_a Immune-Hematopoietic Spleen hg38
 Spleen_b Immune-Hematopoietic Spleen hg38
 Thymus_a Immune-Hematopoietic Thymus hg38
 Thymus_b Immune-Hematopoietic Thymus hg38
 Lymph_node_b Immune-Hematopoietic Lymph Node hg38
 Lymph_node_c Immune-Hematopoietic Lymph Node hg38
 MonoNucCells Immune-Hematopoietic White Blood cells hg38
 WBC_d Immune-Hematopoietic White Blood cells hg38
 WBC_e Immune-Hematopoietic White Blood cells hg38
 CL_MB231 Cell Lines MB231 hg38
 CL_PNT2 Cell Lines PNT2 hg38
 CL_Gm12878 Cell Lines Gm12878 hg38
 CL_K562 Cell Lines K562 hg38
 CL_SHSY5Y_noRA Cell Lines SHSY5Y (no RA) hg38
 CL_SHSY5Y_RA Cell Lines SHSY5Y (with RA) hg38
 Neuroblastoma Cell Lines Neuroblastoma hg38
 CL_EndoBH1C_a Cell Lines EndoBH1C hg38
 CL_HeLa Cell Lines HeLa hg38
 CL_293T Cell Lines 293T hg38
 CL_MCF7 Cell Lines MCF7 hg38
 CL_LP1 Cell Lines LP1 hg38

SampleGroupSubgroupAssembly
 ESC_H1_a ESC ESC (H1) hg19
 ESC_H1_b ESC ESC (H1) hg19
 ESC_H1_c ESC ESC (H1) hg19
 ESC_H1_d ESC ESC (H1) hg19
 ESC_H9_a ESC ESC (H9) hg19
 ESC_H9_b ESC ESC (H9) hg19
 iPS_a iPS iPS cells hg19
 iPS_b iPS iPS cells hg19
 HFDPC Precursors HFDPC hg19
 MSC Precursors Mesenchymal SCs hg19
 NPC_a NPC NPC hg19
 NPC_b NPC NPC hg19
 Embr_Forebrain_St13_14 Embryonic Brain Forebrain (St13-14) hg19
 Embr_Forebrain_St17_20 Embryonic Brain Forebrain (St17-20) hg19
 Embr_Forebrain_St22_23 Embryonic Brain Forebrain (St22-23) hg19
 Embr_Forebrain_9_12wpc Embryonic Brain Forebrain (13-17wpc) hg19
 Embr_Cortex_13_17wpc Embryonic Brain Cortex (13-17wpc) hg19
 Whole_Brain_b Neural Whole Brain hg19
 Cortex Neural Cortex hg19
 Frontal_Gyrus_young Neural Frontal Gyrus (young) hg19
 Frontal_Gyrus_old Neural Frontal Gyrus (old) hg19
 Sup_Temporal_Gyrus Neural Sup Temporal Gyrus hg19
 Cerebellum_a Neural Cerebellum hg19
 Cerebellum_c Neural Cerebellum hg19
 Neurons Neural Neurons hg19
 Retina_a Neural Retina hg19
 Retina_macular Neural Retina hg19
 Retina_peripheral Neural Retina hg19
 Astrocytes Glia Astrocytes hg19
 Microglia Glia Microglia hg19
 Oligodendrocytes Glia Oligodentdrocytes hg19
 Heart_a Muscle Heart hg19
 Heart_b Muscle Heart hg19
 Heart_c Muscle Heart hg19
 Muscle_b Muscle Muscle hg19
 Muscle_d Muscle Muscle hg19
 Muscle_e Muscle Muscle hg19
 Testis_a Testis Testis hg19
 Testis_b Testis Testis hg19
 Testis_c Testis Testis hg19
 Ovary_a Ovary Ovary hg19
 Ovary_b Ovary Ovary hg19
 Placenta_a Placental Placenta hg19
 Placenta_b Placental Placenta hg19
 Placenta_c Placental Placenta hg19
 Decidua Placental Decidua hg19
 Amnion Placental Amnion hg19
 Chorion Placental Chorion hg19
 Skin Epithelial Skin hg19
 Placenta_Epith Epithelial Placental Epithelium hg19
 EpithelialCells Epithelial Epithelial Cells hg19
 Breast_Epith_a Epithelial Breast Epithelium hg19
 HMEpC_a Epithelial Breast Epithelium hg19
 Stomach_a Digestive Tract Stomach hg19
 Stomach_b Digestive Tract Stomach hg19
 Small_intestine Digestive Tract Small intestine hg19
 Colon_b Digestive Tract Colon hg19
 Colon_sigmoid Digestive Tract Colon hg19
 Colon_transverse Digestive Tract Colon hg19
 Liver_a Tissues Liver hg19
 Liver_b Tissues Liver hg19
 Liver_c Tissues Liver hg19
 Kidney_b Tissues Kidney hg19
 Kidney_c Tissues Kidney hg19
 Kidney_d Tissues Kidney hg19
 Lung_b Tissues Lung hg19
 Lung_e Tissues Lung hg19
 Lung_f Tissues Lung hg19
 EndomStromCells Tissues Endometrium hg19
 Adipose_b Tissues Adipose hg19
 Adipose_c Tissues Adipose hg19
 Adipose_d Tissues Adipose hg19
 Breast_a Tissues Breast hg19
 Adrenal_b Tissues Adrenal hg19
 Adrenal_c Tissues Adrenal hg19
 Prostate_b Tissues Prostate hg19
 Prostate_c Tissues Prostate hg19
 Prostate_d Tissues Prostate hg19
 Thyroid_b Tissues Thyroid hg19
 Thyroid_c Tissues Thyroid hg19
 Thyroid_d Tissues Thyroid hg19
 Bladder_a Tissues Bladder hg19
 EndothCells Tissues Endothelium hg19
 Brain_Endoth Tissues Endothelium hg19
 Melanocytes Tissues Melanocytes hg19
 Fibroblasts Cells Fibroblasts hg19
 GLS_cells Cells Various primary cells hg19
 Bone_marrow_a Immune-Hematopoietic Bone Marrow hg19
 Bone_marrow_b Immune-Hematopoietic Bone Marrow hg19
 Bone_marrow_c Immune-Hematopoietic Bone Marrow hg19
 Spleen_a Immune-Hematopoietic Spleen hg19
 Spleen_b Immune-Hematopoietic Spleen hg19
 Thymus_a Immune-Hematopoietic Thymus hg19
 Thymus_b Immune-Hematopoietic Thymus hg19
 Lymph_node_b Immune-Hematopoietic Lymph Node hg19
 Lymph_node_c Immune-Hematopoietic Lymph Node hg19
 MonoNucCells Immune-Hematopoietic White Blood cells hg19
 WBC_MNC_b Immune-Hematopoietic White Blood cells hg19
 WBC_MNC_c Immune-Hematopoietic White Blood cells hg19
 CL_MB231 Cell Lines MB231 hg19
 CL_PNT2 Cell Lines PNT2 hg19
 CL_Gm12878 Cell Lines Gm12878 hg19
 CL_K562 Cell Lines K562 hg19
 Neuroblastoma Cell Lines Neuroblastoma hg19
 CL_HeLa Cell Lines HeLa hg19
 CL_293T Cell Lines 293T hg19
 CL_MCF7 Cell Lines MCF7 hg19
 CL_LP1 Cell Lines LP1 hg19

SampleGroupSubgroupAssembly
 Oocyte_a Early Development Oocyte mm10
 Oocyte_b Early Development Oocyte mm10
 Zygote_be_A Early Development Zygote mm10
 Zygote_c_A Early Development Zygote mm10
 Embr_2C_a Early Development Embryo (2-cell) mm10
 Embr_2C_b Early Development Embryo (2-cell) mm10
 Embr_2C_c Early Development Embryo (2-cell) mm10
 Embr_4C_a Early Development Embryo (4-cell) mm10
 Embr_4C_b Early Development Embryo (4-cell) mm10
 Embr_8C_a Early Development Embryo (8-cell) mm10
 Embr_8C_b Early Development Embryo (8-cell) mm10
 Embr_16C_c_A Early Development Embryo (16-cell) mm10
 Embr_16C_c_B Early Development Embryo (16-cell) mm10
 Embr_16C_c_C Early Development Embryo (16-cell) mm10
 Embr_ICM_early_c_A Inner Cell Mass Embryo (ICM - early) mm10
 Embr_ICM_early_c_B Inner Cell Mass Embryo (ICM - early) mm10
 Embr_ICM_mid_c_A Inner Cell Mass Embryo (ICM - mid) mm10
 Embr_ICM_mid_c_B Inner Cell Mass Embryo (ICM - mid) mm10
 ESC_CGR8 ESC ESC mm10
 ESC_D3 ESC ESC mm10
 ESC_E14 ESC ESC mm10
 ESC_J1 ESC ESC mm10
 ESC_OS25_TT2 ESC ESC mm10
 ESC_v65 ESC ESC mm10
 iPS_a iPS iPS cells mm10
 iPS_b iPS iPS cells mm10
 PGC_E9_5_11_5 PGC PGC (E9.5-11.5) mm10
 PGC_E13_5 PGC PGC (E13.5) mm10
 Embr_Limb_E14_5 Embryonic Tissues Limb (E14.5) mm10
 Embr_Liver_E14_5 Embryonic Tissues Liver (E14.5) mm10
 Embr_E11_FNP Neural Crest Cells Neural crest (E11) mm10
 Embr_E11_Md Neural Crest Cells Neural crest (E11) mm10
 Embr_E11_Mx Neural Crest Cells Neural crest (E11) mm10
 Embr_E11_PA2 Neural Crest Cells Neural crest (E11) mm10
 NPC_a NPC NPC mm10
 NPC_c NPC NPC mm10
 NPC_d NPC NPC mm10
 Ventricular_Zone NPC NPC mm10
 Embr_Brain_E11_5 Embryonic Brain Brain (E11.5) mm10
 Embr_Brain_E14_5 Embryonic Brain Brain (E14.5) mm10
 Embr_Cortex_E17_5 Embryonic Brain Cortex (E17.5) mm10
 Whole_Brain_a Neural Whole Brain mm10
 Whole_Brain_b Neural Whole Brain mm10
 Cortex_a Neural Cortex mm10
 Cortex_b Neural Cortex mm10
 Frontal_Lobe Neural Frontal Lobe mm10
 Thalamus Neural Thalamus mm10
 Hypothalamus Neural Hypothalamus mm10
 Hippocampus Neural Hippocampus mm10
 Cerebellum_a Neural Cerebellum mm10
 Cerebellum_b Neural Cerebellum mm10
 Cerebellum_c Neural Cerebellum mm10
 Neurons_a Neural Neurons mm10
 Neurons_b Neural Neurons mm10
 Neurons_KCl_0h Neural Neurons (KCL 0h) mm10
 Neurons_KCl_3h Neural Neurons (KCL 3h) mm10
 CeliacSM_Ganglion_Snap25 Neural PNS ganglia mm10
 DRoot_Ganglion_Snap25 Neural PNS ganglia mm10
 Nodose_Ganglion_Snap25 Neural PNS ganglia mm10
 Retina_a Neural Retina mm10
 Retina_b Neural Retina mm10
 Retina_c Neural Retina mm10
 Rods_a Neural Photoreceptors mm10
 Cones_a Neural Photoreceptors mm10
 Eye_a Tissues Eye mm10
 Eye_b Tissues Eye mm10
 Eye_c Tissues Eye mm10
 Astrocytes Glia Astrocytes mm10
 Microglia Glia Microglia mm10
 OligodPC Glia Oligodend PCs mm10
 New_Oligod Glia New Oligodend mm10
 Myelinated_Oligod Glia Myelinated Oligod mm10
 Heart_a Muscle Heart mm10
 Heart_b Muscle Heart mm10
 Heart_c Muscle Heart mm10
 Heart_d Muscle Heart mm10
 Muscle_a Muscle Muscle mm10
 Muscle_b Muscle Muscle mm10
 Muscle_c Muscle Muscle mm10
 Testis_a Testis Testis mm10
 Testis_b Testis Testis mm10
 Testis_c Testis Testis mm10
 Ovary_a Ovary Ovary mm10
 Ovary_b Ovary Ovary mm10
 Embr_TE_early_c_A Trophectoderm Trophectoderm (early) mm10
 Embr_TE_mid_c_A Trophectoderm Trophectoderm (early) mm10
 Embr_TE_mid_c_B Trophectoderm Trophectoderm (early) mm10
 Embr_TE_mid_c_C Trophectoderm Trophectoderm (early) mm10
 Embr_TE_late_c_A Trophectoderm Trophectoderm (late) mm10
 Embr_TE_late_c_B Trophectoderm Trophectoderm (late) mm10
 Placenta_a Placental Placenta mm10
 Placenta_c Placental Placenta mm10
 Placenta_d Placental Placenta mm10
 Skin_a Epithelial Skin mm10
 Skin_b Epithelial Skin mm10
 Skin_c Epithelial Skin mm10
 Keratinocytes Epithelial Keratinocytes mm10
 Epidermis_a Epithelial Epidermis mm10
 Epidermis_b Epithelial Epidermis mm10
 Epidermis_c Epithelial Epidermis mm10
 Dermis_a Dermis Dermis mm10
 Dermis_b Dermis Dermis mm10
 Dermis_c Dermis Dermis mm10
 Stomach_a Digestive Tract Stomach mm10
 Stomach_b Digestive Tract Stomach mm10
 Stomach_c Digestive Tract Stomach mm10
 Intestine_small_a Digestive Tract Intestine mm10
 Intestine_small_b Digestive Tract Intestine mm10
 Colon_a Digestive Tract Colon mm10
 Colon_b Digestive Tract Colon mm10
 Colon_c Digestive Tract Colon mm10
 Liver_a Tissues Liver mm10
 Liver_b Tissues Liver mm10
 Liver_c Tissues Liver mm10
 Kidney_a Tissues Kidney mm10
 Kidney_b Tissues Kidney mm10
 Kidney_c Tissues Kidney mm10
 Uterus Tissues Uterus mm10
 Lung_a Tissues Lung mm10
 Lung_c Tissues Lung mm10
 Lung_d Tissues Lung mm10
 FatPad_a Tissues Fat Pad mm10
 FatPad_b Tissues Fat Pad mm10
 White_Adipose Tissues Adipose (white) mm10
 Brown_Adipose Tissues Adipose (brown) mm10
 MammGland_a Tissues Mammary Gland mm10
 MammGland_b Tissues Mammary Gland mm10
 MammGland_c Tissues Mammary Gland mm10
 Adrenal_a Tissues Adrenal mm10
 Adrenal_b Tissues Adrenal mm10
 Adrenal_c Tissues Adrenal mm10
 Prostate_a Tissues Prostate mm10
 Prostate_b Tissues Prostate mm10
 Thyroid_a Tissues Thyroid mm10
 Thyroid_b Tissues Thyroid mm10
 Bladder_a Tissues Bladder mm10
 Bladder_b Tissues Bladder mm10
 Bladder_c Tissues Bladder mm10
 Brain_Endothelium Tissues Brain Endothelium mm10
 MEF_b Cells MEF mm10
 MEF_a Cells MEF mm10
 MEF_c Cells MEF mm10
 HSC_a HSC Hematopoietic stem cells mm10
 HSC_b HSC Hematopoietic stem cells mm10
 HSC_c HSC Hematopoietic stem cells mm10
 Bone_marrow Immune-Hematopoietic Bone Marrow mm10
 Lymph_node_a Immune-Hematopoietic Lymph Node mm10
 Lymph_node_b Immune-Hematopoietic Lymph Node mm10
 Spleen_a Immune-Hematopoietic Spleen mm10
 Spleen_b Immune-Hematopoietic Spleen mm10
 Spleen_c Immune-Hematopoietic Spleen mm10
 Thymus_a Immune-Hematopoietic Thymus mm10
 Thymus_b Immune-Hematopoietic Thymus mm10
 Thymus_c Immune-Hematopoietic Thymus mm10
 Monocytes_ab Immune-Hematopoietic Monocytes mm10
 Monocytes_c Immune-Hematopoietic Monocytes mm10
 Erythroblasts_a Immune-Hematopoietic Erythroblasts mm10
 Erythroblasts_b Immune-Hematopoietic Erythroblasts mm10
 CL_C2C12_a Cell Lines C2C12 mm10
 CL_C2C12_b Cell Lines C2C12 mm10
 CL_CH12 Cell Lines CH12 mm10
 CL_MEL Cell Lines MEL mm10
 CL_3T3_a Cell Lines 3T3 mm10
 CL_3T3_b Cell Lines 3T3 mm10
 CL_N2A_b Cell Lines N2A mm10
 CL_N2A_c Cell Lines N2A mm10

SampleGroupSubgroupAssembly
 Oocyte_a Early Development Oocyte mm9
 Oocyte_b Early Development Oocyte mm9
 Embr_2C_a Early Development Embryo (2-cell) mm9
 Embr_2C_c Early Development Embryo (2-cell) mm9
 Embr_4C_a Early Development Embryo (4-cell) mm9
 Embr_4C_b Early Development Embryo (4-cell) mm9
 Embr_8C_a Early Development Embryo (8-cell) mm9
 Embr_8C_b Early Development Embryo (8-cell) mm9
 ESC_CGR8 ESC ESC mm9
 ESC_D3 ESC ESC mm9
 ESC_E14 ESC ESC mm9
 ESC_J1 ESC ESC mm9
 ESC_OS25_TT2 ESC ESC mm9
 ESC_v65 ESC ESC mm9
 iPS_a iPS iPS cells mm9
 iPS_b iPS iPS cells mm9
 PGC_E9_5_11_5 PGC PGC (E9.5-11.5) mm9
 PGC_E13_5 PGC PGC (E13.5) mm9
 Embr_Limb_E14_5 Embryonic Tissues Limb (E14.5) mm9
 Embr_Liver_E14_5 Embryonic Tissues Liver (E14.5) mm9
 NPC_a NPC NPC mm9
 NPC_c NPC NPC mm9
 NPC_d NPC NPC mm9
 Ventricular_Zone NPC NPC mm9
 Embr_Brain_E11_5 Embryonic Brain Brain (E11.5) mm9
 Embr_Brain_E14_5 Embryonic Brain Brain (E14.5) mm9
 Embr_Cortex_E17_5 Embryonic Brain Cortex (E17.5) mm9
 Whole_Brain_a Neural Whole Brain mm9
 Whole_Brain_b Neural Whole Brain mm9
 Cortex_a Neural Cortex mm9
 Cortex_b Neural Cortex mm9
 Frontal_Lobe Neural Frontal Lobe mm9
 Thalamus Neural Thalamus mm9
 Hypothalamus Neural Hypothalamus mm9
 Hippocampus Neural Hippocampus mm9
 Cerebellum_a Neural Cerebellum mm9
 Cerebellum_b Neural Cerebellum mm9
 Cerebellum_c Neural Cerebellum mm9
 Neurons_a Neural Neurons mm9
 Neurons_b Neural Neurons mm9
 Neurons_KCl_0h Neural Neurons (KCL 0h) mm9
 Neurons_KCl_3h Neural Neurons (KCL 3h) mm9
 Retina_a Neural Retina mm9
 Retina_b Neural Retina mm9
 Retina_c Neural Retina mm9
 Eye_a Tissues Eye mm9
 Eye_b Tissues Eye mm9
 Eye_c Tissues Eye mm9
 Astrocytes Glia Astrocytes mm9
 Microglia Glia Microglia mm9
 OligodPC Glia Oligodend PCs mm9
 New_Oligod Glia New Oligodend mm9
 Myelinated_Oligod Glia Myelinated Oligod mm9
 Myoblast_0h Myoblast Diff Myoblast (0h) mm9
 Myoblast_60h Myoblast Diff Myoblast (60h) mm9
 Myoblast_120h Myoblast Diff Myoblast (120h) mm9
 Myoblast_168h Myoblast Diff Myoblast (168h) mm9
 Heart_a Muscle Heart mm9
 Heart_b Muscle Heart mm9
 Heart_c Muscle Heart mm9
 Heart_d Muscle Heart mm9
 Muscle_a Muscle Muscle mm9
 Muscle_b Muscle Muscle mm9
 Muscle_c Muscle Muscle mm9
 Testis_a Testis Testis mm9
 Testis_b Testis Testis mm9
 Testis_c Testis Testis mm9
 Spermatogonia Spermatogenesis Spermatogonia mm9
 Spermatocytes Spermatogenesis Spermatocytes mm9
 Spermatids Spermatogenesis Spermatids mm9
 Spermatozoa Spermatogenesis Spermatozoa mm9
 Sertoli_cells Spermatogenesis Sertoli cells mm9
 Ovary_a Ovary Ovary mm9
 Ovary_b Ovary Ovary mm9
 Placenta_a Placental Placenta mm9
 Placenta_c Placental Placenta mm9
 Placenta_d Placental Placenta mm9
 Skin_a Epithelial Skin mm9
 Skin_b Epithelial Skin mm9
 Skin_c Epithelial Skin mm9
 Keratinocytes Epithelial Keratinocytes mm9
 Uterus Tissues Uterus mm9
 Stomach_a Digestive Tract Stomach mm9
 Stomach_b Digestive Tract Stomach mm9
 Stomach_c Digestive Tract Stomach mm9
 Intestine_small_a Digestive Tract Intestine mm9
 Intestine_small_b Digestive Tract Intestine mm9
 Colon_a Digestive Tract Colon mm9
 Colon_b Digestive Tract Colon mm9
 Colon_c Digestive Tract Colon mm9
 Liver_a Tissues Liver mm9
 Liver_b Tissues Liver mm9
 Liver_c Tissues Liver mm9
 Kidney_a Tissues Kidney mm9
 Kidney_b Tissues Kidney mm9
 Kidney_c Tissues Kidney mm9
 Lung_a Tissues Lung mm9
 Lung_c Tissues Lung mm9
 Lung_d Tissues Lung mm9
 FatPad_a Tissues Fat Pad mm9
 FatPad_b Tissues Fat Pad mm9
 White_Adipose Tissues Adipose (white) mm9
 Brown_Adipose Tissues Adipose (brown) mm9
 MammGland_a Tissues Mammary Gland mm9
 MammGland_b Tissues Mammary Gland mm9
 MammGland_c Tissues Mammary Gland mm9
 Adrenal_a Tissues Adrenal mm9
 Adrenal_b Tissues Adrenal mm9
 Adrenal_c Tissues Adrenal mm9
 Prostate_a Tissues Prostate mm9
 Prostate_b Tissues Prostate mm9
 Thyroid_a Tissues Thyroid mm9
 Thyroid_b Tissues Thyroid mm9
 Bladder_a Tissues Bladder mm9
 Bladder_b Tissues Bladder mm9
 Bladder_c Tissues Bladder mm9
 Brain_Endothelium Tissues Brain Endothelium mm9
 Pancreas_NewBorn Tissues Pancreas mm9
 Pancreas_9weeks Tissues Pancreas mm9
 MEF_b Cells MEF mm9
 MEF_a Cells MEF mm9
 MEF_c Cells MEF mm9
 Bone_marrow Immune-Hematopoietic Bone Marrow mm9
 Lymph_node_a Immune-Hematopoietic Lymph Node mm9
 Lymph_node_b Immune-Hematopoietic Lymph Node mm9
 Spleen_a Immune-Hematopoietic Spleen mm9
 Spleen_b Immune-Hematopoietic Spleen mm9
 Spleen_c Immune-Hematopoietic Spleen mm9
 Thymus_a Immune-Hematopoietic Thymus mm9
 Thymus_b Immune-Hematopoietic Thymus mm9
 Thymus_c Immune-Hematopoietic Thymus mm9
 CL_C2C12_a Cell Lines C2C12 mm9
 CL_C2C12_b Cell Lines C2C12 mm9
 CL_CH12 Cell Lines CH12 mm9
 CL_MEL Cell Lines MEL mm9
 CL_3T3_a Cell Lines 3T3 mm9
 CL_3T3_b Cell Lines 3T3 mm9
 CL_N2A_b Cell Lines N2A mm9
 CL_N2A_c Cell Lines N2A mm9

SampleGroupSubgroupAssembly
 ESC_a ESC ESC rn6
 ESC_b ESC ESC rn6
 EpiSC EpiSC EpiSC rn6
 Front_Cortex_E20 Embryonic Brain Cortex (E20.5) rn6
 Whole_brain_ab Neural Whole Brain rn6
 Whole_brain_c Neural Whole Brain rn6
 Whole_brain_Fem Neural Whole Brain rn6
 Whole_brain_Male Neural Whole Brain rn6
 Whole_brain_old Neural Whole Brain rn6
 Cortex_ab Neural Cortex rn6
 Cortex_MPFr Neural Cortex rn6
 Cortex_PreFront Neural Cortex rn6
 Dentate_gyrus_a Neural Dentate Gyrus rn6
 Hippocampus_a Neural Hippocampus rn6
 Hippocampus_b Neural Hippocampus rn6
 Hippocampus_c Neural Hippocampus rn6
 Hypothalamus_ab Neural Hypothalamus rn6
 Hypothalamus_c Neural Hypothalamus rn6
 Preoptic_Area_a Neural Preoptic Area rn6
 Preoptic_Area_b Neural Preoptic Area rn6
 Striatum_a Neural Striatum rn6
 Striatum_b Neural Striatum rn6
 Thalamus Neural Thalamus rn6
 Nucleus_Ac_a Neural Nucleus Acc rn6
 Nucleus_Ac_b Neural Nucleus Acc rn6
 Brain_stem Neural Brain Stem rn6
 Spinal_cord_ab Neural Spinal Cord rn6
 Spinal_cord_D_a Neural Spinal Cord rn6
 Cort_Neurons_D16 Neural Neurons (Cultured) rn6
 Cort_Neurons_D24 Neural Neurons (Cultured) rn6
 Cort_Neurons_D4 Neural Neurons (Cultured) rn6
 Cort_Neurons_D8 Neural Neurons (Cultured) rn6
 Retina_a Neural Retina rn6
 Retina_c Neural Retina rn6
 Droot_ganglion_a Neural D Root Ganglion rn6
 Pineal_gland_ac Neural-related Pineal Gland rn6
 Pineal_gland_b Neural-related Pineal Gland rn6
 Sciatic_nerve_a Neural-related Sciatic Nerve rn6
 Choroid_plexus Neural-related Choroid Plexus rn6
 Olfactory_Epithelium Neural-related Olfactory Epithelium rn6
 Oligodendrocyte_a Glia Oligodendrocyte rn6
 Schwann_cells Glia Schwann Cells rn6
 Beta_cells_a Endocrine Beta Cells rn6
 Beta_cells_b Endocrine Beta Cells rn6
 Beta_cells_c Endocrine Beta Cells rn6
 Islets_ab Endocrine Islets rn6
 Cardiac_prog Muscle Cardiac Prog rn6
 Cardiomyocite Muscle Cardiomyocite rn6
 Cardiomyocite_Fem Muscle Cardiomyocite rn6
 Cardiomyocite_Male Muscle Cardiomyocite rn6
 Heart_A Muscle Heart rn6
 Nucleus_SupraOpt Neural Nucleus SupraOpt rn6
 Heart_Fem Muscle Heart rn6
 Heart_L_Ventricle Muscle Heart rn6
 Heart_Male Muscle Heart rn6
 Muscle_a Muscle Muscle rn6
 Muscle_Fem Muscle Muscle rn6
 Muscle_Male Muscle Muscle rn6
 Muscle_Quadriceps Muscle Quadriceps rn6
 Muscle_Triceps Muscle Triceps rn6
 Germ_cell_Male_A Germ Cells Germ Cells rn6
 Germ_cell_Male_B Germ Cells Germ Cells rn6
 Germ_cell_Male_C Germ Cells Germ Cells rn6
 Testes_a Testis Testis rn6
 Testes_b Testis Testis rn6
 Spermatids Testis Spermatids rn6
 Spermatocytes Testis Spermatocytes rn6
 Spermatogonia Testis Spermatogonia rn6
 Sperm_a Testis Sperm rn6
 Sperm_b Testis Sperm rn6
 Sperm_c Testis Sperm rn6
 Sertoli_cells Tissues Sertoli Cells rn6
 Ovary_a Ovary Ovary rn6
 Skin_a Epithelial Skin rn6
 Skin_old Epithelial Skin rn6
 Skin_young Epithelial Skin rn6
 Stomach_a Digestive Tract Stomach rn6
 Small_intestine_a Digestive Tract Small Intestine rn6
 Duodenum_a Digestive Tract Small Intestine rn6
 Jejunum_a Digestive Tract Small Intestine rn6
 Ileum_a Digestive Tract Small Intestine rn6
 Colon_a Digestive Tract Colon rn6
 Colon_b Digestive Tract Colon rn6
 Liver_A Tissues Liver rn6
 Liver_Fem Tissues Liver rn6
 Liver_Male Tissues Liver rn6
 Liver_old Tissues Liver rn6
 Liver_young Tissues Liver rn6
 Hepatocytes_a Tissues Hepatocytes rn6
 Kidney_ab Tissues Kidney rn6
 Kidney_cd Tissues Kidney rn6
 Kidney_Fem Tissues Kidney rn6
 Kidney_Male Tissues Kidney rn6
 Glomeruli_ab Tissues Glomeruli rn6
 Pancreas_whole_a Tissues Pancreas rn6
 Uterus_A Tissues Uterus rn6
 Vasc_smooth_a Tissues Smooth muscle rn6
 Lung_a Tissues Lung rn6
 Lung_Fem Tissues Lung rn6
 Lung_Male Tissues Lung rn6
 Thyroid Tissues Thyroid rn6
 Adrenal_a Tissues Adrenal rn6
 Adrenal_Fem Tissues Adrenal rn6
 Adrenal_Male Tissues Adrenal rn6
 Aorta Tissues Artery rn6
 Mes_Artery_ab Tissues Artery rn6
 Fibroblast_ab Tissues Fibroblasts rn6
 Fibroblast_Endom_a Tissues Fibroblasts rn6
 Spleen_a Immune-Hematopoietic Spleen rn6
 Spleen_Fem Immune-Hematopoietic Spleen rn6
 Spleen_Male Immune-Hematopoietic Spleen rn6
 Thymus_a Immune-Hematopoietic Thymus rn6
 Thymus_Fem Immune-Hematopoietic Thymus rn6
 Thymus_Male Immune-Hematopoietic Thymus rn6
 Blood_b_A Immune-Hematopoietic Blood rn6
 Blood_b_B Immune-Hematopoietic Blood rn6
 WBC_a Immune-Hematopoietic White Blood Cells rn6
 Macrophage_a Immune-Hematopoietic Macrophages rn6
 Rcho1_cells Trophoblast Stem TSC (Rcho1) rn6
 INS1_cells Cell Lines INS1 cells rn6
 CL_PC12_ab Cell Lines PC12 cells rn6
 Glioblastoma Cell Lines C6 cells (Gliobl) rn6

SampleGroupSubgroupAssembly
 Oocyte_GV_a Early Development Oocyte (GV) bosTau6
 Oocyte_GV_b Early Development Oocyte (GV) bosTau6
 Oocyte_MII_a Early Development Oocyte (MII) bosTau6
 Oocyte_MII_b Early Development Oocyte (MII) bosTau6
 Oocyte_MII_c Early Development Oocyte (MII) bosTau6
 Embr_4C_a Early Development Embryo (4-cell) bosTau6
 Embr_8C_a Early Development Embryo (8-cell) bosTau6
 Embr_8C_b Early Development Embryo (8-cell) bosTau6
 Embr_16C_a Early Development Embryo (16-cell) bosTau6
 Embr_Blastocyst_a Early Development Blastocyst bosTau6
 Embr_Blastocyst_e Early Development Blastocyst bosTau6
 Embr_7d_c Early Development Blastocyst bosTau6
 Embr_ICM Early Development Blastocyst (ICM) bosTau6
 Embr_10d_c Mid Development Embryo (10days) bosTau6
 Embr_13d_c Mid Development Embryo (13days) bosTau6
 Embr_16d_c Mid Development Embryo (16days) bosTau6
 Embr_19d_c Mid Development Embryo (19days) bosTau6
 Embr_Brain_Dienc Embryonic Brain Hippoc+Dienceph bosTau6
 Brain_b Neural Brain bosTau6
 Brain_c Neural Brain bosTau6
 Brain_Cortex_a Neural Cortex bosTau6
 Brain_Hypoth Neural Hypothalamus bosTau6
 Brain_SME Neural Brain (SME+Pons) bosTau6
 Brain_Pituitary_a Neural Pituitary bosTau6
 Brain_Pituitary_b Neural Pituitary bosTau6
 Heart_c Heart Heart bosTau6
 Muscle_b Muscle Muscle bosTau6
 Muscle_biceps Muscle Muscle (Biceps) bosTau6
 Muscle_c Muscle Muscle bosTau6
 Muscle_LDM Muscle Muscle (LDM) bosTau6
 Testis_a Testis Testis bosTau6
 Testis_C Testis Testis bosTau6
 Ovary_b Ovary Ovary bosTau6
 Ovary_C Ovary Ovary bosTau6
 Embr_TE Placental Trophectoderm bosTau6
 Placenta_W Placental Placenta bosTau6
 Endometrium_a Tissues Endometrium bosTau6
 Uterus Tissues Uterus bosTau6
 Skin Epithelial Skin bosTau6
 Stomach_a Digestive Tract Stomach bosTau6
 Stomach_b Digestive Tract Stomach bosTau6
 Colon_c Digestive Tract Colon bosTau6
 Colon_Intestine Digestive Tract Colon bosTau6
 Liver_a Tissues Liver bosTau6
 Liver_b Tissues Liver bosTau6
 Liver_c Tissues Liver bosTau6
 Kidney_a Tissues Kidney bosTau6
 Kidney_b Tissues Kidney bosTau6
 Kidney_C Tissues Kidney bosTau6
 Lung Tissues Lung bosTau6
 Tubular Tissues Ducts (various) bosTau6
 Adipose_a Tissues Adipose bosTau6
 Adipose_b Tissues Adipose bosTau6
 Adipose_C Tissues Adipose bosTau6
 Bone_marrow Immune-Hematopoietic Bone Marrow bosTau6
 LymphNode_a Immune-Hematopoietic Lymph Node bosTau6
 Spleen Immune-Hematopoietic Spleen bosTau6
 WBC Immune-Hematopoietic White Blood cells bosTau6

SampleGroupSubgroupAssembly
 Oocyte_A Early Embryo Oocyte galGal4
 Zygote_A Early Embryo Zygote galGal4
 Embr_EGKI_A Early Embryo Embryo (EGKI) galGal4
 Embr_EGKIII_A Early Embryo Embryo (EGKIII) galGal4
 Embr_EGKVI_A Early Embryo Embryo (EGKVI) galGal4
 Embr_EGKVIII_A Early Embryo Embryo (EGKVIII) galGal4
 Embr_EGKX_A Early Embryo Embryo (EGKX) galGal4
 Embr_StageX_a Early Embryo Embryo (EGKX) galGal4
 Embr_StageX_b Early Embryo Embryo (EGKX) galGal4
 Embr_StageX_c Early Embryo Embryo (EGKX) galGal4
 Embr_Blastoderm_Fem Early Embryo Blastoderm (F) galGal4
 Embr_Blastoderm_Male Early Embryo Blastoderm (M) galGal4
 Embr_PrimStreak Early Embryo Primitive Streak galGal4
 Embr_HH4 Early Embryo Embryo (HH4) galGal4
 Embr_HH6 Early Embryo Embryo (HH6) galGal4
 Embr_HH11_a Mid Embryo Embryo (HH11) galGal4
 Embr_HH11_b Mid Embryo Embryo (HH11) galGal4
 Embr_HH14_a Mid Embryo Embryo (HH14) galGal4
 Embr_HH14_b Mid Embryo Embryo (HH14) galGal4
 Embr_HH16 Mid Embryo Embryo (HH16) galGal4
 Embr_HH19 Mid Embryo Embryo (HH19) galGal4
 Embr_HH21_22 Mid Embryo Embryo (HH21-22) galGal4
 Embr_HH25_26 Mid Embryo Embryo (HH25-26) galGal4
 Embr_HH28 Mid Embryo Embryo (HH28) galGal4
 Embr_HH30_31 Mid Embryo Embryo (HH30-31) galGal4
 Embr_HH32 Mid Embryo Embryo (HH32) galGal4
 Embr_HH36 Mid Embryo Embryo (HH36) galGal4
 Embr_HH38 Mid Embryo Embryo (HH38) galGal4
 Embr_Scales Embryo Tissues Embryonic Scales galGal4
 Neural_Crest Neural Crest Neural Crest galGal4
 Cerebellum_a Neural Cerebellum galGal4
 Cerebellum_b Neural Cerebellum galGal4
 Optic_Lobe Neural Optic Lobe galGal4
 Telencephalon Neural Telencephalon galGal4
 Whole_Brain Neural Whole Brain galGal4
 Brain_Fem Neural Whole Brain (F) galGal4
 Brain_Male Neural Whole Brain (M) galGal4
 Muscle_b Muscle Muscle (F) galGal4
 Muscle_c Muscle Muscle galGal4
 Muscle_a Muscle Muscle galGal4
 Muscle_Fem Muscle Muscle (F) galGal4
 Muscle_Male Muscle Muscle (M) galGal4
 Heart_a Heart Heart galGal4
 Heart_b Heart Heart galGal4
 Heart_Fem Heart Heart (F) galGal4
 Heart_Male Heart Heart (M) galGal4
 Fetal_MaleGonads Fetal Gonads Fetal Gonads (M) galGal4
 Testis_a Testis Testis galGal4
 Testis_b Testis Testis galGal4
 Testis_c Testis Testis galGal4
 Fetal_FemGonads Fetal Gonads Fetal Gonads (F) galGal4
 Ovary_a Ovary Ovary galGal4
 Ovary_b Ovary Ovary galGal4
 Ovary_c Ovary Ovary galGal4
 Ovary_d Ovary Ovary galGal4
 Skin_b Skin Skin galGal4
 Skin_c Skin Skin galGal4
 Skin_a Skin Skin galGal4
 Proventriculus Digestive Tract Proventriculus galGal4
 Small_Intestine Digestive Tract Intestine galGal4
 Duodenum Digestive Tract Duodenum galGal4
 Ileum_b Digestive Tract Ileum galGal4
 Ileum_a Digestive Tract Ileum galGal4
 Colon_a Digestive Tract Colon galGal4
 Abdominal_Fat_b Tissues Adipose galGal4
 Abdominal_Fat_c Tissues Adipose galGal4
 Abdominal_Fat_a Tissues Adipose galGal4
 Gizzard_Fat Tissues Adipose galGal4
 Kidney_a Tissues Kidney galGal4
 Kidney_Fem Tissues Kidney galGal4
 Kidney_b Tissues Kidney galGal4
 Kidney_Male Tissues Kidney galGal4
 Liver_a Tissues Liver galGal4
 Liver_Fem Tissues Liver galGal4
 Liver_b Tissues Liver galGal4
 Liver_Male Tissues Liver galGal4
 Lung_a Tissues Lung galGal4
 Lung_Fem Tissues Lung galGal4
 Lung_b Tissues Lung galGal4
 Lung_Male Tissues Lung galGal4
 Magnum Tissues Magnum galGal4
 Pancreas Tissues Pancreas galGal4
 Thyroid Tissues Thyroid galGal4
 Trachea Tissues Trachea galGal4
 Tibial_bone Immune-Hematopoietic Tibial Bone galGal4
 Bursa_Fem Immune-Hematopoietic Bursa galGal4
 Bursa Immune-Hematopoietic Bursa galGal4
 Bursa_Male Immune-Hematopoietic Bursa galGal4
 Cecal_Tonsils_a Immune-Hematopoietic Cecal Tonsils galGal4
 Cecal_Tonsils_b Immune-Hematopoietic Cecal Tonsils galGal4
 Cecal_Tonsils_c Immune-Hematopoietic Cecal Tonsils galGal4
 Harderian_Gland Immune-Hematopoietic Harderian Gland galGal4
 Spleen_a Immune-Hematopoietic Spleen galGal4
 Spleen_Fem Immune-Hematopoietic Spleen galGal4
 Spleen_b Immune-Hematopoietic Spleen galGal4
 Spleen_Male Immune-Hematopoietic Spleen galGal4
 Thymus Immune-Hematopoietic Thymus galGal4
 BMD_Macrophages Immune-Hematopoietic BMD Macrophages galGal4
 CL_DF1 Cell Line DF1 galGal4
 CL_DT40_a Cell Line DT40 galGal4
 CL_DT40_b Cell Line DT40 galGal4

SampleGroupSubgroupAssembly
 Embr_StageX_a EarlyDev StageX galGal3
 Embr_StageX_b EarlyDev StageX galGal3
 Embr_StageX_c EarlyDev StageX galGal3
 Embr_Blastoderm_Fem EarlyDev Blastoderm galGal3
 Embr_Blastoderm_Male EarlyDev Blastoderm galGal3
 Embr_PrimStreak EarlyDev Primitive_Streak galGal3
 Embr_HH4_c EarlyDev HH4 galGal3
 Embr_HH6 EarlyDev HH6 galGal3
 Embr_HH11 MidDev HH11 galGal3
 Embr_HH11_c MidDev HH11 galGal3
 Embr_HH14 MidDev HH14 galGal3
 Embr_HH14_c MidDev HH14 galGal3
 Embr_HH16 MidDev HH16 galGal3
 Embr_HH19 MidDev HH19 galGal3
 Embr_HH21_22_c MidDev HH21_22 galGal3
 Embr_HH25_26_c MidDev HH25_26 galGal3
 Embr_HH28 MidDev HH28 galGal3
 Embr_7d MidDev HH30_31 galGal3
 Embr_HH32_c MidDev HH32 galGal3
 Embr_HH36_c MidDev HH36 galGal3
 Embr_HH38 MidDev HH38 galGal3
 Fetal_FemGonads EmbrGonads Fetal_Fem_Gonads galGal3
 Fetal_MaleGonads EmbrGonads Fetal_Male_Gonads galGal3
 Embr_Scales EmbrScales Embr_Scales galGal3
 NeuralCrest NeuralCrest Neural_Crest galGal3
 Brain_BNP Neural Whole_Brain galGal3
 Brain_Fem Neural Whole_Brain galGal3
 Brain_Male Neural Whole_Brain galGal3
 Brain_Telencephalon Neural Telencephalon galGal3
 CerebellumP Neural Cerebellum galGal3
 Heart_BNP Muscle Heart galGal3
 Heart_Fem Muscle Heart galGal3
 Heart_Male Muscle Heart galGal3
 Muscle_BN Muscle Muscle galGal3
 Muscle_Fem Muscle Muscle galGal3
 Muscle_Male Muscle Muscle galGal3
 Testes_Male Testis Testis galGal3
 Testis_BP Testis Testis galGal3
 Ovarium_Fem Ovary Ovarium galGal3
 ColonB Digestive_tract Colon galGal3
 Liver_BNP Tissues Liver galGal3
 Liver_Fem Tissues Liver galGal3
 Liver_Male Tissues Liver galGal3
 Kidney_BNP Tissues Kidney galGal3
 Kidney_Fem Tissues Kidney galGal3
 Kidney_Male Tissues Kidney galGal3
 LungB Tissues Lung galGal3
 Lung_Fem Tissues Lung galGal3
 Lung_Male Tissues Lung galGal3
 Magnum Tissues Magnum galGal3
 AbdominalFat Tissues Abdominal_Fat galGal3
 Tibial_bone Immune_hematopoiesis Tibial_bone galGal3
 Bursa_Fem Immune_hematopoiesis Bursa galGal3
 Bursa_Male Immune_hematopoiesis Bursa galGal3
 SpleenB Immune_hematopoiesis Spleen galGal3
 Spleen_Fem Immune_hematopoiesis Spleen galGal3
 Spleen_Male Immune_hematopoiesis Spleen galGal3
 BMDMacroph Immune_hematopoiesis BMD_Macrophages galGal3
 CL_DF1 CLines CL_DF1 galGal3
 CL_DT40 CLines CL_DT40 galGal3
 CL_DT40_c CLines CL_DT40 galGal3

SampleGroupSubgroupAssembly
 Eggs_A Early Development Eggs danRer10
 Embr_2C4C_M Early Development Embryo (2-4-cell) danRer10
 Embr_2hpf_c Early Development Embryo (2hpf) danRer10
 Embr_2hpf_H Early Development Embryo (2hpf) danRer10
 Embr_1K Early Development Embryo (1K-cell) danRer10
 Embr_oblong_A Early Development Embryo (Oblong) danRer10
 Embr_Sphere_A Early Development Embryo (Sphere) danRer10
 Embr_Dome Early Development Embryo (Dome) danRer10
 Embr_Shield_A Early Development Embryo (Shield) danRer10
 Embr_8hpf_H Early Development Embryo (8hpf) danRer10
 Embr_Bud Early Development Embryo (Bud) danRer10
 Embr_12hpf_H Early Development Embryo (12hpf) danRer10
 Embr_10som Mid Development Embryo (10-somites) danRer10
 Embr_16hpf_H Mid Development Embryo (16hpf) danRer10
 Embr_20hpf_H Mid Development Embryo (20hpf) danRer10
 Embr_24hpf_A Mid Development Embryo (24hpf) danRer10
 Embr_26hpf_H Mid Development Embryo (26hpf) danRer10
 Embr_28hpf Mid Development Embryo (28hpf) danRer10
 Embr_32hpf_G Mid Development Embryo (32hpf) danRer10
 Embr_48hpf_A Mid Development Embryo (48hpf) danRer10
 Embr_48hpf_B Mid Development Embryo (48hpf) danRer10
 Embr_72hpf_A Late Development Embryo (72hpf) danRer10
 Embr_4dpf_A Late Development Embryo (4dpf) danRer10
 Embr_5dpf_A Late Development Embryo (5dpf) danRer10
 Embr_6dpf_A Late Development Embryo (6dpf) danRer10
 Embr_7dpf_A Late Development Embryo (7dpf) danRer10
 PGC_7h_A Germ Line Germ cells (7 hpf) danRer10
 PGC_7h_B Germ Line Germ cells (7 hpf) danRer10
 PGC_24h_A Germ Line Germ cells (24 hpf) danRer10
 PGC_24h_B Germ Line Germ cells (24 hpf) danRer10
 Embr_EVL_Pos Embryonic Tissues EVL cells (11 hpf) danRer10
 Embr_EVL_Neg Embryonic Tissues Non-EVL cells (11 hpf) danRer10
 Embr_Gata1_cells Embryonic Tissues Gata1+ cells (24-48hpf) danRer10
 Embr_Heart_48hpf Embryonic Muscle Embryonic Heart (48hpf) danRer10
 Embr_Head_5_6dpf Embryonic Brain Embryonic Head (5-6dpf) danRer10
 Head Neural Head danRer10
 Brain_4_fem Neural Whole Brain danRer10
 Brain_4_male Neural Whole Brain danRer10
 Brain_A Neural Whole Brain danRer10
 Brain_Telenc Neural Telencephalon danRer10
 Forebrain_Cont Neural Forebrain danRer10
 Inf_Olive_Nuc Neural Inf Olive Nucleus danRer10
 Midbrain_Cont Neural Midbrain danRer10
 Cerebellum Neural Cerebellum danRer10
 Hindbrain_Cont Neural Hindbrain danRer10
 SpinalCord_Sham Neural Spinal cord danRer10
 Eurydendroid_cells Neural Eurydendroid cells danRer10
 Granule_cells Neural Granule cells danRer10
 Purkinje_cells Neural Purkinje cells danRer10
 Neurons_HuC_72hpf Neural Neurons (HuC+, 72hpf) danRer10
 Neurons_SpCord_HuC_20hpf Neural Spinal Cord (HuC+, 20hpf) danRer10
 Neurons_SpCord_Olig2_20hpf Neural Spinal Cord (Olig2+, 20hpf) danRer10
 Rods_XOPS_GFPpos Neural Rods danRer10
 Retina_Adult_a Neural Retina danRer10
 Retina_Adult_b Neural Retina danRer10
 Bergmann_glia Glia Bergmann Glia danRer10
 Heart_A Muscle Heart danRer10
 Muscle_A Muscle Muscle danRer10
 Muscle_B Muscle Muscle danRer10
 Testis_A Testis Testis danRer10
 Sperm Testis Sperm danRer10
 Ovary_A Ovary Ovary danRer10
 Skin Epithelial Skin danRer10
 Adipose_a Tissues Adipose danRer10
 Pancreas_AlphaCells Endocrine Pancreas Alpha cells danRer10
 Pancreas_BetaCells Endocrine Pancreas Beta cells danRer10
 Pancreas_DeltaCells Endocrine Pancreas Delta cells danRer10
 Pancreas_Acinar Tissues Acinar pancreas danRer10
 Pancreas_CAC Tissues Acinar pancreas danRer10
 Pancreas_nonCAC Tissues Non-acinar pancreas danRer10
 Intestine_A Digestive Tract Intestine danRer10
 Kidney_A Tissues Kidney danRer10
 Liver_A Tissues Liver danRer10
 SwimBladder Tissues Swim Bladder danRer10
 Gills_A Tissues Gills danRer10
 Pericyte Tissues Pericyte danRer10
 Pect_Fin Tissues Pectoral Fin danRer10
 Bones Tissues Bones danRer10
 Spleen_A Immune-Hematopoietic Spleen danRer10
 Granulocytes Immune-Hematopoietic Granulocytes danRer10

SampleGroupSubgroupAssembly
 Embr_0_2h_a Embryos Embryo (0-2h) dm6
 Embr_2_4h_a Embryos Embryo (2-4h) dm6
 Embr_4_6h_a Embryos Embryo (4-6h) dm6
 Embr_6_8h_a Embryos Embryo (6-8h) dm6
 Embr_8_10h_a Embryos Embryo (8-10h) dm6
 Embr_10_12h_a Embryos Embryo (10-12h) dm6
 Embr_12_14h_a Embryos Embryo (12-14h) dm6
 Embr_14_16h_a Embryos Embryo (14-16h) dm6
 Embr_16_18h_a Embryos Embryo (16-18h) dm6
 Embr_18_20h_a Embryos Embryo (18-20h) dm6
 Embr_20_22h_a Embryos Embryo (20-22h) dm6
 Embr_22_24h_a Embryos Embryo (22-24h) dm6
 Larva_L1_a Larva Larva (L1) dm6
 Larva_L2_a Larva Larva (L2) dm6
 Larva_L3_12hpm_a Larva Larva (L3 12hpm) dm6
 Larva_L3_PS1_2_a Larva Larva (L3 PS1-2) dm6
 Larva_L3_PS3_6_a Larva Larva (L3 PS3-6) dm6
 Larva_L3_PS7_9_a Larva Larva (L3 PS7-9) dm6
 Pupae_12h_aWPP_a Pupae Pupae (12-24h) dm6
 Pupae_24h_aWPP_a Pupae Pupae (12-24h) dm6
 Pupae_2d_aWPP_a Pupae Pupae (2d-4d) dm6
 Pupae_3d_aWPP_a Pupae Pupae (2d-4d) dm6
 Pupae_4d_aWPP_a Pupae Pupae (2d-4d) dm6
 WhitePrePupae_a PrePupae White PrePupae dm6
 Adult_Fem_1d_a Tissues Whole Adult (F) dm6
 Adult_Fem_30d_a Tissues Whole Adult (F) dm6
 Adult_Fem_5d_a Tissues Whole Adult (F) dm6
 Adult_Male_1d_a Tissues Whole Adult (M) dm6
 Adult_Male_30d_a Tissues Whole Adult (M) dm6
 Adult_Male_5d_a Tissues Whole Adult (M) dm6
 Carcass_Larva_a Tissues Carcass (Larva) dm6
 Carcass_Larva_L3_a Tissues Carcass (Larva) dm6
 Carcass_Adult Tissues Carcass (Adult) dm6
 Carcass_Fem_a Tissues Carcass (Adult) dm6
 Carcass_Male_a Tissues Carcass (Adult) dm6
 Head_Adult_Mated_Fem Head Head (Adult) dm6
 Head_Adult_Mated_Male Head Head (Adult) dm6
 Head_Adult_Virgin_Fem Head Head (Adult) dm6
 Head_Fem_a Head Head (Adult) dm6
 Head_Male_a Head Head (Adult) dm6
 CNS_Larva_a Developing CNS CNS (Larva) dm6
 CNS_Larva_L3_a Developing CNS CNS (Larva) dm6
 CNS_Prepupae_a Developing CNS CNS (Prepupae) dm6
 Brain_a Neural Brain dm6
 Brain_b Neural Brain dm6
 Brain_Fem_a Neural Brain (F) dm6
 Brain_Male_a Neural Brain (M) dm6
 Ganglion_TA_Fem_a Neural Ganglion TA dm6
 Ganglion_TA_Male_a Neural Ganglion TA dm6
 OpticLobe_b Neural Optic Lobe dm6
 Neurons_ChAT Neural Neurons (ChAT) dm6
 Neurons_Dm Neural Neurons (Dm) dm6
 Neurons_Gad1 Neural Neurons (Gad1) dm6
 Neurons_Kenyon Neural Neurons (Kenyon) dm6
 Neurons_Larva Neural Neurons (Larva) dm6
 Neurons_Octopam Neural Neurons (Tdc2) dm6
 Neurons_R57C10 Neural Neurons (nSyb) dm6
 Neurons_VGlut Neural Neurons (VGlut) dm6
 Eye_Fem_a Eye Eye dm6
 Eye_Male_a Eye Eye dm6
 Photoreceptor_dark Photoreceptor Photoreceptor dm6
 Photoreceptor_light Photoreceptor Photoreceptor dm6
 Photoreceptors_M Photoreceptor Photoreceptor dm6
 Antenna_Fem_a Antenna Antenna dm6
 Antenna_Male_a Antenna Antenna dm6
 Glia_Eg Glia Glia (Eg) dm6
 Glia_Larva_NB Glia Glia (Larva) dm6
 Glia_Mg Glia Glia (Mg) dm6
 Glia_Psg Glia Glia (Psg) dm6
 Muscle_IFM_a Muscle Muscle dm6
 Muscle_TD_a Muscle Muscle dm6
 Testis_4dpe_a Testis Testis dm6
 Testis_a Testis Testis dm6
 Testis_b Testis Testis dm6
 Testis_c Testis Testis dm6
 Ovary_4dpe_a Ovary Ovary dm6
 Ovary_a Ovary Ovary dm6
 Ovary_Virgin Ovary Ovary dm6
 EyeAntennae_ImDisc_a Imaginal Discs Imaginal Discs dm6
 Imaginal_Discs_L3_a Imaginal Discs Imaginal Discs dm6
 Wing_pouch_L3_Tryp_a Imaginal Discs Wing Pouch (L3) dm6
 Epidermis_a Epidermis Epidermis dm6
 FatBody_c Fat Body Fat Body (Adult) dm6
 FatBody_Fem_a Fat Body Fat Body (Adult) dm6
 FatBody_Male_a Fat Body Fat Body (Adult) dm6
 FatBody_Old_a Fat Body Fat Body (Adult) dm6
 FatBody_Young_a Fat Body Fat Body (Adult) dm6
 FatBody_Larva_a Fat Body Fat Body (Larva) dm6
 FatBody_Larva_L3_a Fat Body Fat Body (Larva) dm6
 FatBody_Prepupae_a Fat Body Fat Body (Larva) dm6
 Gut_Adult_a Gut Gut (Adult) dm6
 Gut_Old_b Gut Gut (Adult) dm6
 Gut_Young_b Gut Gut (Adult) dm6
 Gut_Larva_L3_a Gut Gut (Larva) dm6
 Midgut_Fem_a Gut Midgut (Adult) dm6
 Midgut_Male_a Gut Midgut (Adult) dm6
 Midgut_Larva_a Gut Midgut (Larva) dm6
 Hindgut_Fem_a Gut Hindgut (Adult) dm6
 Hindgut_Male_a Gut Hindgut (Adult) dm6
 Hindgut_Larva_a Gut Hindgut (Larva) dm6
 Accessory_Glands_Male_a Tissues Accessory Glands dm6
 Accessory_Glands_Male_b Tissues Accessory Glands dm6
 Anal_Pad_Fem_a Tissues Anal Pad dm6
 Anal_Pad_Male_a Tissues Anal Pad dm6
 Crop_Fem_a Tissues Crop dm6
 Crop_Male_a Tissues Crop dm6
 MalpighianTube_b Tissues Malpighian Tubule (Adult) dm6
 MalpighianTube_Fem_bc Tissues Malpighian Tubule (Adult) dm6
 MalpighianTubes_Fem_a Tissues Malpighian Tubule (Adult) dm6
 MalpighianTubes_Male_a Tissues Malpighian Tubule (Adult) dm6
 MalpighianTubes_Larva_a Tissues Malpighian Tubule (Larva) dm6
 Salivary_Gland_Fem_a Tissues Salivary Gland (Adult) dm6
 Salivary_Gland_Larva_a Tissues Salivary Gland (Adult) dm6
 Salivary_Gland_Male_a Tissues Salivary Gland (Adult) dm6
 Salivary_Glands_Larva_L3_a Tissues Salivary Gland (Larva) dm6
 Salivary_Glands_Prepupae_a Tissues Salivary Gland (Larva) dm6
 Spermatheca_Mated_Fem_a Tissues Spermatheca dm6
 Spermatheca_Virgin_Fem_a Tissues Spermatheca dm6
 Trachea_Larva_a Tissues Trachea dm6
 CL_S2_a Cell Lines S2 Cell Line dm6
 CL_S2_b Cell Lines S2 Cell Line dm6