BtaEX0001692 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49669786-49673706:+
Coord C1 exon
chr3:49669786-49669915
Coord A exon
chr3:49673097-49673217
Coord C2 exon
chr3:49673644-49673706
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTCCTCTTTTCTTCCTCTAGGAC
3' ss Score
12.99
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGAGGAGCACTCTTCAAATCCATTCCAGTGGGACCTGATTGGGAAGAACCTGGCTGCCATGGCAGTAGAAGGTGTGGTGTACTTCCTCTTGACGCTCCTCATCCAATACCAGTTCTTCTTCAGCCGATG
Seq A exon
GACTACCGAGCCTGCAAAGGAGCCCATCACAGATGAAGATGATGATGTGGCTGAAGAAAGGCAGAGAATTATTAGTGGAGGAAATAAAACTGATATCTTAAGGCTAAATGAACTCACCAAG
Seq C2 exon
GTTTATTCAGGCACCTCCAGCCCAGCAGTGGACAGGCTGTGTGTGGGAGTCCGCCCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010-'48-42,'48-41,49-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.293 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.1=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(11.6=52.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGAGCACTCTTCAAATCCA
R:
CTCTCCAGGGCGGACTCC
Band lengths:
193-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development