RnoEX6011352 @ rn6
Exon Skipping
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225763452-225767959:+
Coord C1 exon
chr2:225763452-225763581
Coord A exon
chr2:225767387-225767507
Coord C2 exon
chr2:225767897-225767959
Length
121 bp
Sequences
Splice sites
3' ss Seq
GCTCATGCCCCTTCCTCTAGGAT
3' ss Score
9.88
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGAGGAGTACTCTGCAAACCCATTCCAGTGGGACCTGATTGGGAAGAACCTGGTTGCTATGGCAATAGAAGGGGTGGTGTACTTCCTTCTGACCCTGCTCATCCAACACCACTTTTTCCTCACCCGGTG
Seq A exon
GATCGCTGAGCCTGCTAGAGAGCCCGTTTTTGATGAAGATGATGATGTGGCTGAAGAAAGGCAAAGAGTTATGAGTGGAGGAAGTAAAAGTGACATCTTAAAGCTAAACGAACTAACCAAG
Seq C2 exon
GTTTACTCAGGCTCCTCCAGTCCAGCAGTAGATCGGTTATGTGTCGGCGTCCACCCTGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892-'60-59,'60-58,64-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.098 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(11.0=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Skipping Isoform:
ENSRNOT00000017878fB310
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGAGTACTCTGCAAACCC
R:
GGGTGGACGCCGACACATAA
Band lengths:
186-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]