MmuEX6073793 @ mm10
Exon Skipping
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:122158314-122162923:+
Coord C1 exon
chr3:122158314-122158443
Coord A exon
chr3:122162301-122162421
Coord C2 exon
chr3:122162861-122162923
Length
121 bp
Sequences
Splice sites
3' ss Seq
GCCCATGCCCCTTCCTCTAGGAT
3' ss Score
10.72
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGAGGAGTACTCTGCAAACCCATTCCAGTGGGACCTGATTGGGAAGAACCTGGTTGCTATGGCAATAGAAGGGGTGGTATACTTCCTTCTGACCCTGCTCATCCAACACCATTTTTTCCTCACCCGGTG
Seq A exon
GATCGCTGAGCCTGCTAGAGAGCCCGTTTTTGATGAAGATGACGATGTGGCTGAAGAAAGACAAAGAGTTATGAGTGGGGGAAATAAAACCGACATCTTAAAGCTAAACGAACTAACCAAG
Seq C2 exon
GTTTACTCAGGCTCTTCCAGTCCAGCAGTAGATCGGTTATGTGTTGGAGTTCGACCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125-'71-86,'71-76,77-86=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.122 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(11.0=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGTACTCTGCAAACCCA
R:
TCTCCAGGTCGAACTCCAACA
Band lengths:
191-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types