DreEX6026084 @ danRer10
Exon Skipping
Gene
ENSDARG00000062661 | abca4b
Description
ATP-binding cassette, sub-family A (ABC1), member 4b [Source:ZFIN;Acc:ZDB-GENE-050517-4]
Coordinates
chr2:15616950-15617554:+
Coord C1 exon
chr2:15616950-15617079
Coord A exon
chr2:15617275-15617395
Coord C2 exon
chr2:15617492-15617554
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTGTGTGTATGTAGGAT
3' ss Score
9.37
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GAGAGGAGTTTTCCATGGATCCGTTCAGATGGAACTTTGTGGGGAAGAATCTCTTCTGTATGGCTGTGGAGGGTTTTGTCTATTTCATTTTTAACCTCCTCATCCAGTACAAATTTTTCCTTCATCACTG
Seq A exon
GATATCAGACTATGGGATGAGCCTAGGTACAGATGAAGATGATGATGTAGCTCAGGAGAGAGAGCGCATTTACAAAGGGGGGAATAAAAATGACATCCTTCTAATCCGAGACTTGTCAAAA
Seq C2 exon
ACCTACAGGCGCAGAAAACGACCAGCAGTGGACAAAATCTGTGTAGGAGTTCCAGCGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062661-'48-46,'48-45,49-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(8.6=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGTTTTCCATGGATCCGT
R:
CCGCTGGAACTCCTACACAGA
Band lengths:
186-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]