GgaEX6044186 @ galGal4
Exon Skipping
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12673804-12675841:+
Coord C1 exon
chr8:12673804-12673933
Coord A exon
chr8:12674819-12674939
Coord C2 exon
chr8:12675779-12675841
Length
121 bp
Sequences
Splice sites
3' ss Seq
AATTCTTTTTTTTTTTCCAGGTT
3' ss Score
10.85
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTGAGGAGCATGTTTCTAATCCTTTTCAGTGGGACTTCATTGGGAAGAACCTGGTTGCCATGGCTGTTCAAGGAGTAGCATTCTTCACTCTGAATCTCCTTATGCAGCACCAATTATTCCCCTCAAGATG
Seq A exon
GTTTGCTGAGACTGCCAAGTCACCTATTATTGATGAAGATGAGGATGTTGCAGAAGAAAGAAAAAGAATTCTGAATGGAGGGAACAAAACAAATATCTTAGAATTACAGGAACTCACCAAG
Seq C2 exon
ATTTATGCAGGTAGGCATAAGCCAGCAGTGGACAGACTCTGTGTTGGCATCCGTCCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'47-50,'47-49,48-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(10.1=75.0)
A:
NO
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGAGCATGTTTCTAATCCT
R:
GGACGGATGCCAACACAGAG
Band lengths:
186-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]