BtaEX0009020 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004908 | CHRNE
Description
Bos taurus cholinergic receptor, nicotinic, epsilon (muscle) (CHRNE), mRNA. [Source:RefSeq mRNA;Acc:NM_174272]
Coordinates
chr19:27119260-27120067:+
Coord C1 exon
chr19:27119260-27119369
Coord A exon
chr19:27119512-27119667
Coord C2 exon
chr19:27119967-27120067
Length
156 bp
Sequences
Splice sites
3' ss Seq
CGGTTTCCTGGAGCCCACAGTAT
3' ss Score
-0.64
5' ss Seq
CCGGTGGGA
5' ss Score
5.27
Exon sequences
Seq C1 exon
GACTGGCAAGATTACCGACTCAACTACAGCAAGGGCGACTTTGGGGGCGTAGAAACCCTGCGGGTCCCTTCAGAACTCGTATGGCTGCCAGAGATTGTGCTGGAAAACAA
Seq A exon
TATCGACGGCCAGTTCGGGGTGGCCTACGAGGCCAATGTGCTGGTCTCTGAGGGCGGCTACTTGAGCTGGTTGCCCCCGGCCATCTACCGCAGTACCTGCGCCGTGGAGGTCACCTACTTCCCTTTCGACTGGCAGAACTGCTCGCTCGTTTTCCG
Seq C2 exon
CTCCCAGACGTACAATGCCGAAGAGGTGGAGTTTGTCTTTGCGGTGGACGACGAGGGCAAGACCATCAGCAAGATCGATATCGATACTGAGGCCTATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004908_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(16.6=100)
A:
PF0293118=Neur_chan_LBD=FE(24.0=100)
C2:
PF0293118=Neur_chan_LBD=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGCAAGATTACCGACTCA
R:
CAGTATAGGCCTCAGTATCGATATCG
Band lengths:
210-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development