RnoEX0021236 @ rn6
Exon Skipping
Gene
ENSRNOG00000003777 | Chrne
Description
cholinergic receptor nicotinic epsilon subunit [Source:RGD Symbol;Acc:2353]
Coordinates
chr10:57241692-57242603:-
Coord C1 exon
chr10:57242494-57242603
Coord A exon
chr10:57242239-57242394
Coord C2 exon
chr10:57241692-57241792
Length
156 bp
Sequences
Splice sites
3' ss Seq
GAAAAGCTTGGTTTCCACAGTAT
3' ss Score
2.25
5' ss Seq
TCGGTAGGA
5' ss Score
7.45
Exon sequences
Seq C1 exon
GAATGGCAAGACTATCGGCTCAACTTCAGCAAGGACGATTTTGCAGGCGTAGAAATCCTGCGGGTCCCTTCCGAACATGTATGGCTGCCAGAGATTGTTCTGGAAAACAA
Seq A exon
TATTGATGGGCAGTTTGGAGTGGCCTACGACTGCAATGTTCTGGTCTATGAGGGAGGCTCTGTGAGCTGGCTGCCCCCAGCTATCTACCGCAGCACGTGCGCAGTGGAGGTCACCTATTTCCCCTTTGACTGGCAGAACTGCTCTCTCATTTTTCG
Seq C2 exon
TTCCCAGACCTACAATGCTGAAGAGGTGGAGTTCATCTTTGCAGTGGATGACGATGGCAATGCCATCAACAAAATTGACATCGACACCGCAGCTTTTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003777-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(16.6=100)
A:
PF0293118=Neur_chan_LBD=FE(24.0=100)
C2:
PF0293118=Neur_chan_LBD=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGCAAGACTATCGGCTCA
R:
GGTAAAAGCTGCGGTGTCGAT
Band lengths:
210-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]