DreEX0021729 @ danRer10
Exon Skipping
Gene
ENSDARG00000034307 | chrne
Description
cholinergic receptor, nicotinic, epsilon [Source:ZFIN;Acc:ZDB-GENE-040808-32]
Coordinates
chr5:37845662-37846245:-
Coord C1 exon
chr5:37846136-37846245
Coord A exon
chr5:37845907-37846062
Coord C2 exon
chr5:37845662-37845762
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACAAAATAACCTCTTTTCAGCAT
3' ss Score
5.06
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
Exon sequences
Seq C1 exon
CAGTGGCATGATTATCGTCTTGCGTGGAACACATCTGAGTATCATGACATTGAGCAAATTCGTGTGCCATACTACACAGTGTGGCTACCAGACATAGTATTGGAAAACAA
Seq A exon
CATTGATGGCAAGTTTGATGTGGCATACTACGCTAATGTGCTGATTTCATCTGATGGCTCCATGTACTGGCTTCCCCCTGCTATCTATCGCAGCACCTGTGCTATTGAAATCACCTACTTCCCTTTTGACTGGCAGAACTGCACACTGGTCTTCAG
Seq C2 exon
GTCTCAGACATACAGTGCAAATGAGATTGATATTGTACTGGCAGAAGATGAGAACGGAAAGCCTATTGAGTGGGTGGACATTGATCCTGAGGCTTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034307-'3-6,'3-4,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(16.6=100)
A:
PF0293118=Neur_chan_LBD=FE(24.0=100)
C2:
PF0293118=Neur_chan_LBD=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGCATGATTATCGTCTTGC
R:
TGTGAAAGCCTCAGGATCAATGT
Band lengths:
210-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]