HsaEX6020250 @ hg38
Exon Skipping
Gene
ENSG00000108556 | CHRNE
Description
cholinergic receptor nicotinic epsilon subunit [Source:HGNC Symbol;Acc:HGNC:1966]
Coordinates
chr17:4901525-4902326:-
Coord C1 exon
chr17:4902217-4902326
Coord A exon
chr17:4901932-4902087
Coord C2 exon
chr17:4901525-4901625
Length
156 bp
Sequences
Splice sites
3' ss Seq
CGGTTTCCCCGAGCCCACAGTAT
3' ss Score
0.5
5' ss Seq
CCGGTGGGA
5' ss Score
5.27
Exon sequences
Seq C1 exon
GATTGGCAGGATTACCGACTCAACTACAGCAAGGACGACTTTGGGGGTATAGAAACCCTGCGAGTCCCTTCAGAACTCGTGTGGCTGCCAGAGATTGTGCTGGAAAACAA
Seq A exon
TATTGATGGCCAGTTCGGAGTGGCCTACGACGCCAACGTGCTCGTCTACGAGGGCGGCTCCGTGACGTGGCTGCCTCCGGCCATCTACCGCAGCGTCTGCGCAGTGGAGGTCACCTACTTCCCCTTCGATTGGCAGAACTGTTCGCTTATTTTCCG
Seq C2 exon
CTCTCAGACGTACAATGCCGAAGAGGTGGAGTTCACTTTTGCCGTAGACAACGACGGCAAGACCATCAACAAGATCGACATCGACACAGAGGCCTATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108556-'6-7,'6-5,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(16.6=100)
A:
PF0293118=Neur_chan_LBD=FE(24.0=100)
C2:
PF0293118=Neur_chan_LBD=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGCAGGATTACCGACTCA
R:
CAGTATAGGCCTCTGTGTCGA
Band lengths:
210-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains