BtaEX0009668 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019807 | COL27A1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MTP1]
Coordinates
chr8:105171262-105176134:+
Coord C1 exon
chr8:105171262-105171315
Coord A exon
chr8:105175857-105175913
Coord C2 exon
chr8:105176081-105176134
Length
57 bp
Sequences
Splice sites
3' ss Seq
CGCTGGTTTCGCCTCCGCAGGGG
3' ss Score
9.81
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GGACACAAAGGCATCATGGGACCCCTCGGACCTCCTGGACCAAAGGGTGAAAAG
Seq A exon
GGGGAGCAGGGCGAGGACGGCAAGGCTGAGGGGCCCCCTGGACCACCTGGAGATCGG
Seq C2 exon
GGCCCTGTGGGTGATCGAGGAGACCGTGGCGAACCAGGGGACCCTGGATACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019807-'43-35,'43-34,44-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(27.9=100)
A:
PF0139113=Collagen=PD(14.8=47.4),PF0139113=Collagen=PU(16.1=52.6)
C2:
PF0139113=Collagen=FE(27.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACAAAGGCATCATGGGA
R:
AGGGTATCCAGGGTCCCC
Band lengths:
108-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development