MmuEX6093884 @ mm10
Exon Skipping
Gene
ENSMUSG00000045672 | Col27a1
Description
collagen, type XXVII, alpha 1 [Source:MGI Symbol;Acc:MGI:2672118]
Coordinates
chr4:63315562-63317540:+
Coord C1 exon
chr4:63315562-63315615
Coord A exon
chr4:63317328-63317384
Coord C2 exon
chr4:63317487-63317540
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGGTTCTGTGGTGTCCACAGGGG
3' ss Score
9.32
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GGACACAAAGGCATCACAGGACCCCTCGGGCCTCCCGGGCCCAAAGGCGAGAAG
Seq A exon
GGGGACCAGGGCGAGGATGGCAAGACCGAGGGGCCCCCTGGGCCACCAGGAGATCGG
Seq C2 exon
GGTCCTGTGGGTGATCGAGGAGACCGTGGGGAGCCAGGCGACCCTGGATACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045672-'67-72,'67-65,73-72=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(26.6=100)
A:
PF0139113=Collagen=PD(14.1=47.4),PF0139113=Collagen=PU(16.1=52.6)
C2:
PF0139113=Collagen=FE(27.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACAAAGGCATCACAGGA
R:
AGGGTATCCAGGGTCGCCT
Band lengths:
108-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types